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    LOC4341585 uncharacterized LOC4341585 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341585, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341585
    Gene description
    uncharacterized LOC4341585
    Locus tag
    OSNPB_060632700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 11.6), leaves after flowering (RPKM 10.5) and 6 other tissues See more
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    Genomic context

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    See LOC4341585 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26505085..26508713, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25641522..25645223, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278631 Neighboring gene putative B3 domain-containing protein Os06g0632500 Neighboring gene protein GLUTAMINE DUMPER 6 Neighboring gene Phytosulfokines 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341585
    Names
    Os06g0632700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26505085..26508713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788855.3 → XP_015644341.1  uncharacterized protein LOC4341585

      UniProtKB/TrEMBL
      A0A0P0WZ03, A3BDS9, Q0DAT1
      Conserved Domains (5) summary
      smart00575
      Location:603 → 626
      ZnF_PMZ; plant mutator transposase zinc finger
      COG3328
      Location:334 → 508
      IS285; Transposase (or an inactivated derivative) [Mobilome: prophages, transposons]
      pfam03108
      Location:146 → 210
      DBD_Tnp_Mut; MuDR family transposase
      cl02720
      Location:9 → 101
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
      cl24015
      Location:354 → 427
      DDE_Tnp_ISL3; Transposase

    2. XM_015788853.3 → XP_015644339.1  uncharacterized protein LOC4341585

      UniProtKB/TrEMBL
      A0A0P0WZ03, A3BDS9, Q0DAT1
      Conserved Domains (5) summary
      smart00575
      Location:603 → 626
      ZnF_PMZ; plant mutator transposase zinc finger
      COG3328
      Location:334 → 508
      IS285; Transposase (or an inactivated derivative) [Mobilome: prophages, transposons]
      pfam03108
      Location:146 → 210
      DBD_Tnp_Mut; MuDR family transposase
      cl02720
      Location:9 → 101
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
      cl24015
      Location:354 → 427
      DDE_Tnp_ISL3; Transposase

    3. XM_015788854.3 → XP_015644340.1  uncharacterized protein LOC4341585

      UniProtKB/TrEMBL
      A0A0P0WZ03, A3BDS9, Q0DAT1
      Conserved Domains (5) summary
      smart00575
      Location:603 → 626
      ZnF_PMZ; plant mutator transposase zinc finger
      COG3328
      Location:334 → 508
      IS285; Transposase (or an inactivated derivative) [Mobilome: prophages, transposons]
      pfam03108
      Location:146 → 210
      DBD_Tnp_Mut; MuDR family transposase
      cl02720
      Location:9 → 101
      PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
      cl24015
      Location:354 → 427
      DDE_Tnp_ISL3; Transposase
    Nucleotide Protein
    Heading Accession and Version

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