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    LOC4344194 RNA-binding protein BRN1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344194, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4344194
    Gene description
    RNA-binding protein BRN1
    Locus tag
    OSNPB_070663300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1343_D04.110-1; OJ1343_D04.110-2
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    Genomic context

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    See LOC4344194 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28210857..28215765, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27983248..27988181, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene 4-alpha-glucanotransferase DPE2-like Neighboring gene uncharacterized LOC9272479 Neighboring gene uncharacterized LOC107281762 Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene momilactone A synthase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein BRN1; RNA-binding protein BRN2
    Names
    Os07g0663300
    P0453E03.130-1
    P0453E03.130-2
    putative CUG triplet repeat RNA-binding protein 1
    putative apoptosis-related RNA binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28210857..28215765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312200.1 → XP_066168297.1  RNA-binding protein BRN1 isoform X4

      UniProtKB/TrEMBL
      A0A0P0XA29

    2. XM_015791270.3 → XP_015646756.1  RNA-binding protein BRN1 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X9U2, A0A0P0XA29, Q7XAN8
      Conserved Domains (3) summary
      TIGR01661
      Location:11 → 424
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12362
      Location:350 → 422
      RRM3_CELF1-6; RNA recognition motif 3 (RRM3) found in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins
      cl17169
      Location:13 → 89
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_026027126.2 → XP_025882911.1  RNA-binding protein BRN2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XA29
      Conserved Domains (2) summary
      cd12362
      Location:422 → 494
      RRM3_CELF1-6; RNA recognition motif 3 (RRM3) found in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins
      cl17169
      Location:13 → 89
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_066312199.1 → XP_066168296.1  RNA-binding protein BRN2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XA29, B8B5L0, B9FUQ1
    Nucleotide Protein
    Heading Accession and Version

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