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    LOC4335638 SWI/SNF complex component SNF12 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335638, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335638
    Gene description
    SWI/SNF complex component SNF12 homolog
    Locus tag
    OSNPB_040382100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335638 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19090223..19092286)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18736029..18737892)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial Neighboring gene transcription factor BHLH156-like Neighboring gene exocyst complex component EXO70A1 Neighboring gene uncharacterized LOC112938602 Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF complex component SNF12 homolog
    Names
    Os04g0382100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      19090223..19092286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309233.1 → XP_066165330.1  SWI/SNF complex component SNF12 homolog

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials