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    LOC4339520 peptidyl-tRNA hydrolase, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339520, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339520
    Gene description
    peptidyl-tRNA hydrolase, mitochondrial-like
    Locus tag
    OSNPB_050549600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 16.6), roots after flowering (RPKM 13.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27451606..27454450)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27286994..27289877)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276836 Neighboring gene uncharacterized LOC107277235 Neighboring gene threonine synthase, chloroplastic Neighboring gene AP2/ERF and B3 domain-containing protein Os05g0549800-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-tRNA hydrolase, mitochondrial-like
    Names
    Os05g0549600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27451606..27454450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782588.3 → XP_015638074.1  peptidyl-tRNA hydrolase, mitochondrial-like

      UniProtKB/TrEMBL
      A2Y759
      Conserved Domains (1) summary
      cd02406
      Location:70 → 260
      CRS2; Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct ...
    Nucleotide Protein
    Heading Accession and Version

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