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    LOC4330938 probable pectinesterase/pectinesterase inhibitor 35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330938, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330938
    Gene description
    probable pectinesterase/pectinesterase inhibitor 35
    Locus tag
    OSNPB_020783000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1311_D08.13
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    Genomic context

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    See LOC4330938 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33716989..33719441, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33221274..33223787, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein TONSOKU Neighboring gene uncharacterized LOC107280130 Neighboring gene uncharacterized LOC136355412 Neighboring gene transcription termination factor MTERF4, chloroplastic-like Neighboring gene uncharacterized LOC136355293

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectinesterase/pectinesterase inhibitor 35
    Names
    Os02g0783000
    putative pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33716989..33719441 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769979.3 → XP_015625465.2  probable pectinesterase/pectinesterase inhibitor 35

      UniProtKB/TrEMBL
      A0A0P0VQA8, Q0DX02
      Conserved Domains (1) summary
      PLN02170
      Location:107 → 588
      PLN02170; probable pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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