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    LOC4325749 protein LONG AFTER FAR-RED 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325749, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325749
    Gene description
    protein LONG AFTER FAR-RED 3
    Locus tag
    OSNPB_010952700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325749 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42616190..42622182)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41964142..41970070)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator ORR4-like Neighboring gene uncharacterized LOC4325748 Neighboring gene uncharacterized LOC4325751 Neighboring gene protein IRON-RELATED TRANSCRIPTION FACTOR 2 Neighboring gene uncharacterized LOC4325753

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LONG AFTER FAR-RED 3
    Names
    Os01g0952700
    P0431G06.12
    putative LAF3
    putative amidohydrolase YtcJ

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42616190..42622182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757221.3 → XP_015612707.1  protein LONG AFTER FAR-RED 3 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XQV9, B8A983, B9EWH5, Q0JFZ2, Q5JKZ8
      Conserved Domains (1) summary
      cd01300
      Location:57 → 541
      YtcJ_like; YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.

    2. XM_015757222.3 → XP_015612708.1  protein LONG AFTER FAR-RED 3 isoform X2

      Conserved Domains (1) summary
      cd01300
      Location:57 → 482
      YtcJ_like; YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
    Nucleotide Protein
    Heading Accession and Version

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