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    LOC101927829 uncharacterized LOC101927829 [ Homo sapiens (human) ]

    Gene ID: 101927829, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101927829
    Gene description
    uncharacterized LOC101927829
    See related
    Ensembl:ENSG00000231304
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927829 in Genome Data Viewer
    Location:
    3p24.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (20342468..20350928)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (20351079..20359538)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (20383960..20392420)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14136 Neighboring gene RNY4 pseudogene 22 Neighboring gene NANOG hESC enhancer GRCh37_chr3:20312862-20313363 Neighboring gene MPRA-validated peak4563 silencer Neighboring gene RNA, U6 small nuclear 822, pseudogene Neighboring gene MPRA-validated peak4564 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:20353005-20353506 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:20355404-20355578 Neighboring gene MPRA-validated peak4566 silencer Neighboring gene MPRA-validated peak4565 silencer Neighboring gene RNA, U6 small nuclear 815, pseudogene Neighboring gene MPRA-validated peak4567 silencer Neighboring gene Sharpr-MPRA regulatory region 10717 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67891 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67940 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67948 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:20832001-20832502 Neighboring gene MPRA-validated peak4571 silencer Neighboring gene uncharacterized LOC107986068

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC107622.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110814.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC107622, BC041892
      Related
      ENST00000455626.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      20342468..20350928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187535.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      69053..77513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      20351079..20359538
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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