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    KIF16B kinesin family member 16B [ Homo sapiens (human) ]

    Gene ID: 55614, updated on 10-Dec-2024

    Summary

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    Official Symbol
    KIF16Bprovided by HGNC
    Official Full Name
    kinesin family member 16Bprovided by HGNC
    Primary source
    HGNC:HGNC:15869
    See related
    Ensembl:ENSG00000089177 MIM:618171; AllianceGenome:HGNC:15869
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SNX23; C20orf23; KISC20ORF
    Summary
    The protein encoded by this gene is a kinesin-like protein that may be involved in intracellular trafficking. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2010]
    Expression
    Ubiquitous expression in adrenal (RPKM 10.5), colon (RPKM 7.0) and 24 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See KIF16B in Genome Data Viewer
    Location:
    20p12.1
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (16272104..16573448, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (16322635..16624561, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (16252749..16554093, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904874 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:16187279-16187780 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:16187781-16188280 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:16208020-16208897 Neighboring gene Sharpr-MPRA regulatory region 11342 Neighboring gene peptidylprolyl isomerase A pseudogene 17 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:16240179-16240692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17561 Neighboring gene Sharpr-MPRA regulatory region 7814 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12682 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:16417298-16418497 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:16456599-16456834 Neighboring gene Sharpr-MPRA regulatory region 3089 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_59877 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:16553850-16554371 Neighboring gene uncharacterized LOC124904875 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_59894 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. KIF16B is a candidate gene for a novel autosomal-recessive intellectual disability syndrome. Alsahli S, et al. Am J Med Genet A, 2018 Jul. PMID 29736960
    2. KIF16B drives MT1-MMP recycling in macrophages and promotes co-invasion of cancer cells. Hey S, et al. Life Sci Alliance, 2023 Nov. PMID 37696580, Free PMC Article
    3. Novel genetic variants in KIF16B and NEDD4L in the endosome-related genes are associated with nonsmall cell lung cancer survival. Yang S, et al. Int J Cancer, 2020 Jul 15. PMID 31618441, Free PMC Article
    4. The fusion of early endosomes induces molecular-motor-driven tubule formation and fission. Skjeldal FM, et al. J Cell Sci, 2012 Apr 15. PMID 22357949
    5. Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B. Hoepfner S, et al. Cell, 2005 May 6. PMID 15882625

    See all (47) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. KIF16B drives MT1-MMP recycling in macrophages and promotes co-invasion of cancer cells.
      Title: KIF16B drives MT1-MMP recycling in macrophages and promotes co-invasion of cancer cells.
    2. Novel genetic variants in KIF16B and NEDD4L in the endosome-related genes are associated with nonsmall cell lung cancer survival.
      Title: Novel genetic variants in KIF16B and NEDD4L in the endosome-related genes are associated with nonsmall cell lung cancer survival.
    3. KIF16B mutation is associated with autosomal-recessive intellectual disability syndrome.
      Title: KIF16B is a candidate gene for a novel autosomal-recessive intellectual disability syndrome.
    4. The kinesin KIF16B mediates apical transcytosis of transferrin receptor in AP-1B-deficient epithelia.
      Title: The kinesin KIF16B mediates apical transcytosis of transferrin receptor in AP-1B-deficient epithelia.
    5. The tubule formations were dependent on microtubule interactions, and specifically controlled by Kif16b and dynein 1.
      Title: The fusion of early endosomes induces molecular-motor-driven tubule formation and fission.
    6. genome-wide significance in genes involved in synaptic signaling (KIF16B; p = 1.27E-08) and neurodevelopment (PAX5; p = 3.58E-08).
      Title: Genome-wide association study of intelligence: additive effects of novel brain expressed genes.
    7. KIF16B, a kinesin-3, transports early endosomes to the plus end of microtubules in a process regulated by the small GTPase Rab5 and its effector.
      Title: Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.
    EBI GWAS Catalog
    Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
    EBI GWAS Catalog
    Genome-wide association study of intelligence: additive effects of novel brain expressed genes.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphatidylinositol-3,4,5-trisphosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4-bisphosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylinositol-3,5-bisphosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables plus-end-directed microtubule motor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables plus-end-directed microtubule motor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to endosome transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in early endosome to late endosome transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in endoderm development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in epidermal growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in fibroblast growth factor receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in formation of primary germ layer ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in receptor catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of receptor recycling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle transport along microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in early endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of kinesin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in spindle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinesin-like protein KIF16B
    Names
    kinesin motor protein
    sorting nexin 23
    testis secretory sperm-binding protein Li 201a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_028043.2 RefSeqGene

      Range
      4987..306331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001199865.2 → NP_001186794.1  kinesin-like protein KIF16B isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus and lacks an alternate internal segment compared to isoform 1.
      Source sequence(s)
      AL049794, AL117376, AY166853, BC050577
      Consensus CDS
      CCDS82598.1
      UniProtKB/TrEMBL
      A0A1B0GTU3
      Related
      ENSP00000489838.1, ENST00000636835.1
      Conserved Domains (8) summary
      cd06874
      Location:1133 → 1260
      PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      COG0419
      Location:597 → 1087
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:797 → 807
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:607 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. NM_001199866.2 → NP_001186795.1  kinesin-like protein KIF16B isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL049794, AL117376, AY166853, BC050577, BC150261
      Consensus CDS
      CCDS56178.1
      UniProtKB/Swiss-Prot
      Q96L93
      Related
      ENSP00000384164.1, ENST00000408042.5
      Conserved Domains (6) summary
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam09755
      Location:608 → 881
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      pfam13476
      Location:615 → 776
      AAA_23; AAA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated

    3. NM_001410853.1 → NP_001397782.1  kinesin-like protein KIF16B isoform 4

      Status: REVIEWED

      Source sequence(s)
      AL049794, AL117376, AL118509
      Consensus CDS
      CCDS93009.1
      UniProtKB/TrEMBL
      A0A1B0GVS8
      Related
      ENSP00000490639.2, ENST00000635823.2

    4. NM_024704.5 → NP_078980.3  kinesin-like protein KIF16B isoform 2

      See identical proteins and their annotated locations for NP_078980.3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AL049794, AL117376, AY166853, BC050577
      Consensus CDS
      CCDS13122.1
      UniProtKB/Swiss-Prot
      A6NKJ9, A7E2A8, B1AKG3, B1AKT7, C9JDN5, C9JI52, C9JSM8, C9JWJ7, Q2TBF5, Q5HYC0, Q5HYK1, Q5JWW3, Q5TFK5, Q86VL9, Q86YS5, Q8IYU0, Q96L93, Q9BQJ8, Q9BQM0, Q9BQM1, Q9BQM5, Q9H5U0, Q9HCI2, Q9NXN9
      UniProtKB/TrEMBL
      A0A140VK74
      Related
      ENSP00000347076.2, ENST00000354981.7
      Conserved Domains (8) summary
      cd06874
      Location:1184 → 1311
      PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      COG0419
      Location:597 → 1081
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:797 → 807
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:607 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      16272104..16573448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047440266.1 → XP_047296222.1  kinesin-like protein KIF16B isoform X13

    2. XM_047440264.1 → XP_047296220.1  kinesin-like protein KIF16B isoform X11

    3. XM_017027926.2 → XP_016883415.1  kinesin-like protein KIF16B isoform X9

      UniProtKB/Swiss-Prot
      Q96L93

    4. XM_047440262.1 → XP_047296218.1  kinesin-like protein KIF16B isoform X6

    5. XM_047440265.1 → XP_047296221.1  kinesin-like protein KIF16B isoform X12

    6. XM_047440263.1 → XP_047296219.1  kinesin-like protein KIF16B isoform X10

    7. XM_005260755.4 → XP_005260812.1  kinesin-like protein KIF16B isoform X8

      Conserved Domains (8) summary
      cd06874
      Location:1144 → 1271
      PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      COG0419
      Location:608 → 1098
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:808 → 818
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:618 → 818
      GBP_C; Guanylate-binding protein, C-terminal domain

    8. XM_006723588.4 → XP_006723651.1  kinesin-like protein KIF16B isoform X7

      Conserved Domains (8) summary
      cd06874
      Location:1178 → 1281
      PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      COG0419
      Location:608 → 1092
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:808 → 818
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:618 → 818
      GBP_C; Guanylate-binding protein, C-terminal domain

    9. XM_005260754.4 → XP_005260811.1  kinesin-like protein KIF16B isoform X5

      Conserved Domains (8) summary
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      COG0419
      Location:608 → 1092
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:808 → 818
      GBP_C; coiled coil [structural motif]
      cl02563
      Location:1195 → 1292
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
      cl20817
      Location:618 → 818
      GBP_C; Guanylate-binding protein, C-terminal domain

    10. XM_005260753.4 → XP_005260810.1  kinesin-like protein KIF16B isoform X4

      Conserved Domains (8) summary
      cd06874
      Location:1195 → 1322
      PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam09755
      Location:619 → 892
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:808 → 818
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:618 → 818
      GBP_C; Guanylate-binding protein, C-terminal domain

    11. XM_047440261.1 → XP_047296217.1  kinesin-like protein KIF16B isoform X3

    12. XM_005260751.5 → XP_005260808.1  kinesin-like protein KIF16B isoform X2

      Conserved Domains (7) summary
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam13868
      Location:599 → 923
      TPH; Trichohyalin-plectin-homology domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:797 → 807
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:607 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    13. XM_005260750.4 → XP_005260807.1  kinesin-like protein KIF16B isoform X1

      Conserved Domains (7) summary
      smart00129
      Location:3 → 365
      KISc; Kinesin motor, catalytic domain. ATPase
      cd01365
      Location:2 → 365
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam00498
      Location:478 → 543
      FHA; FHA domain
      pfam13868
      Location:610 → 934
      TPH; Trichohyalin-plectin-homology domain
      pfam16183
      Location:364 → 476
      Kinesin_assoc; Kinesin-associated
      cd16269
      Location:808 → 818
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:618 → 818
      GBP_C; Guanylate-binding protein, C-terminal domain

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      16322635..16624561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054323646.1 → XP_054179621.1  kinesin-like protein KIF16B isoform X13

    2. XM_054323644.1 → XP_054179619.1  kinesin-like protein KIF16B isoform X11

    3. XM_054323642.1 → XP_054179617.1  kinesin-like protein KIF16B isoform X9

    4. XM_054323639.1 → XP_054179614.1  kinesin-like protein KIF16B isoform X6

    5. XM_054323645.1 → XP_054179620.1  kinesin-like protein KIF16B isoform X12

    6. XM_054323643.1 → XP_054179618.1  kinesin-like protein KIF16B isoform X10

    7. XM_054323641.1 → XP_054179616.1  kinesin-like protein KIF16B isoform X8

    8. XM_054323640.1 → XP_054179615.1  kinesin-like protein KIF16B isoform X7

    9. XM_054323638.1 → XP_054179613.1  kinesin-like protein KIF16B isoform X5

    10. XM_054323637.1 → XP_054179612.1  kinesin-like protein KIF16B isoform X4

    11. XM_054323636.1 → XP_054179611.1  kinesin-like protein KIF16B isoform X3

    12. XM_054323635.1 → XP_054179610.1  kinesin-like protein KIF16B isoform X2

    13. XM_054323634.1 → XP_054179609.1  kinesin-like protein KIF16B isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96L93.2 GenPept UniProtKB/Swiss-Prot:Q96L93

    Gene LinkOut

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