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    COPS7B COP9 signalosome subunit 7B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712697, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COPS7Bprovided by VGNC
    Official Full Name
    COP9 signalosome subunit 7Bprovided by VGNC
    Primary source
    VGNC:VGNC:71186
    Locus tag
    EGK_04895
    See related
    Ensembl:ENSMMUG00000022831
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COPS7B in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (119215357..119244012)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (114290324..114318780)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene prothymosin alpha Neighboring gene phosphodiesterase 6D Neighboring gene U6 spliceosomal RNA Neighboring gene guanidinoacetate N-methyltransferase pseudogene Neighboring gene natriuretic peptide C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in COP9 signalosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 7b
    Names
    COP9 constitutive photomorphogenic homolog subunit 7B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194616.3 → NP_001181545.2  COP9 signalosome complex subunit 7b

      See identical proteins and their annotated locations for NP_001181545.2

      Status: PROVISIONAL

      Source sequence(s)
      BQ807740, DV771033, QNVO02000079
      UniProtKB/TrEMBL
      A0A1D5RDP7, A0A1D5RK71, F6T991, G7N959
      Related
      ENSMMUP00000060715.1, ENSMMUT00000064269.2
      Conserved Domains (1) summary
      smart00753
      Location:88 → 177
      PAM; PCI/PINT associated module

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      119215357..119244012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015111250.2 → XP_014966736.1  COP9 signalosome complex subunit 7b isoform X1

      UniProtKB/TrEMBL
      A0A5K1UA85, A0A8J8Y4J8, F6UMP9
      Conserved Domains (1) summary
      smart00753
      Location:88 → 177
      PAM; PCI/PINT associated module

    2. XM_001113929.4 → XP_001113929.1  COP9 signalosome complex subunit 7b isoform X2

      See identical proteins and their annotated locations for XP_001113929.1

      UniProtKB/TrEMBL
      A0A1D5RDP7, A0A1D5RK71, F6T991, G7N959
      Related
      ENSMMUP00000037422.3, ENSMMUT00000044406.3
      Conserved Domains (1) summary
      smart00753
      Location:88 → 177
      PAM; PCI/PINT associated module

    3. XM_015111255.2 → XP_014966741.1  COP9 signalosome complex subunit 7b isoform X5

      UniProtKB/TrEMBL
      F6UMP9
      Conserved Domains (1) summary
      smart00753
      Location:55 → 144
      PAM; PCI/PINT associated module

    4. XM_028830566.1 → XP_028686399.1  COP9 signalosome complex subunit 7b isoform X4

      Conserved Domains (2) summary
      smart00088
      Location:2 → 70
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam18392
      Location:59 → 108
      CSN7a_helixI; COP9 signalosome complex subunit 7a helix I domain

    5. XM_028830565.1 → XP_028686398.1  COP9 signalosome complex subunit 7b isoform X3

      Conserved Domains (1) summary
      smart00088
      Location:88 → 177
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

    6. XM_015111251.2 → XP_014966737.1  COP9 signalosome complex subunit 7b isoform X1

      UniProtKB/TrEMBL
      A0A5K1UA85, A0A8J8Y4J8, F6UMP9
      Related
      ENSMMUP00000030063.4, ENSMMUT00000032133.4
      Conserved Domains (1) summary
      smart00753
      Location:88 → 177
      PAM; PCI/PINT associated module

    7. XM_028830567.1 → XP_028686400.1  COP9 signalosome complex subunit 7b isoform X4

      Conserved Domains (2) summary
      smart00088
      Location:2 → 70
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam18392
      Location:59 → 108
      CSN7a_helixI; COP9 signalosome complex subunit 7a helix I domain
    Nucleotide Protein
    Heading Accession and Version

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