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    HMGB1 high mobility group box 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712849, updated on 5-Mar-2024

    Summary

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    Gene symbol
    HMGB1
    Gene description
    high mobility group box 1
    See related
    Ensembl:ENSMMUG00000046615
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HMGB1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (9529287..9684084, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (10038330..10193015, complement)

    Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994207 Neighboring gene ubiquitin conjugating enzyme E2 L5 Neighboring gene uncharacterized LOC114673443 Neighboring gene pre-mRNA-splicing factor RBM22 pseudogene Neighboring gene tyrosine-protein phosphatase non-receptor type 2 Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding, bending IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265806.1 → NP_001252735.1  high mobility group protein B1

      See identical proteins and their annotated locations for NP_001252735.1

      Status: PROVISIONAL

      Source sequence(s)
      JV667384
      UniProtKB/TrEMBL
      A0A1D5RFB1, F6Y7C3, F7H4R4, H9F1D1
      Related
      ENSMMUP00000059005.2, ENSMMUT00000060343.2
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041770.1 Reference Mmul_10 Primary Assembly

      Range
      9529287..9684084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028837151.1 → XP_028692984.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RFB1, F6Y7C3, F7H4R4, H9F1D1
      Related
      ENSMMUP00000061634.1, ENSMMUT00000086822.1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    2. XM_028837152.1 → XP_028692985.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RFB1, F6Y7C3, F7H4R4, H9F1D1
      Related
      ENSMMUP00000080857.1, ENSMMUT00000094739.1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    3. XM_028837153.1 → XP_028692986.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RFB1, F6Y7C3, F7H4R4, H9F1D1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    4. XM_028837154.1 → XP_028692987.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5RFB1, F6Y7C3, F7H4R4, H9F1D1
      Related
      ENSMMUP00000063311.1, ENSMMUT00000095110.1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain
    Nucleotide Protein
    Heading Accession and Version

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