U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LCOR ligand dependent nuclear receptor corepressor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705646, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LCORprovided by VGNC
    Official Full Name
    ligand dependent nuclear receptor corepressorprovided by VGNC
    Primary source
    VGNC:VGNC:106067
    Locus tag
    EGK_19939
    See related
    Ensembl:ENSMMUG00000010427
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LCOR in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (97274514..97437978)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (92323094..92480826)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene growth/differentiation factor 11-like Neighboring gene microRNA mir-607 Neighboring gene slit guidance ligand 1 Neighboring gene Rho GTPase activating protein 19

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C10orf12; ligand-dependent corepressor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      97274514..97437978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015147851.2 → XP_015003337.2  ligand-dependent corepressor isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZKB4, A0A5F7ZL44
      Related
      ENSMMUP00000066072.1, ENSMMUT00000097802.1
      Conserved Domains (3) summary
      PHA03307
      Location:717 → 878
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:842 → 1148
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1236 → 1696
      DUF4553; Domain of unknown function (DUF4553)

    2. XM_028826721.1 → XP_028682554.1  ligand-dependent corepressor isoform X7

      Conserved Domains (1) summary
      pfam05225
      Location:494 → 537
      HTH_psq; helix-turn-helix, Psq domain

    3. XM_015147845.2 → XP_015003331.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Related
      ENSMMUP00000076655.1, ENSMMUT00000080358.1
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    4. XM_015147855.2 → XP_015003341.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Related
      ENSMMUP00000070051.1, ENSMMUT00000106767.1
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    5. XM_015147846.2 → XP_015003332.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    6. XM_015147844.2 → XP_015003330.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    7. XM_028826717.1 → XP_028682550.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    8. XM_028826719.1 → XP_028682552.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    9. XM_028826722.1 → XP_028682555.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Related
      ENSMMUP00000013669.3, ENSMMUT00000014589.4
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    10. XM_028826718.1 → XP_028682551.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    11. XM_028826715.1 → XP_028682548.1  ligand-dependent corepressor isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (2) summary
      COG5271
      Location:887 → 1193
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1281 → 1741
      DUF4553; Domain of unknown function (DUF4553)

    12. XM_028826720.1 → XP_028682553.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    13. XM_028826716.1 → XP_028682549.1  ligand-dependent corepressor isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:760 → 921
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:885 → 1191
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1279 → 1739
      DUF4553; Domain of unknown function (DUF4553)

    14. XM_015147852.2 → XP_015003338.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Related
      ENSMMUP00000035753.3, ENSMMUT00000014590.4
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.