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    EBLN2 endogenous Bornavirus like nucleoprotein 2 [ Homo sapiens (human) ]

    Gene ID: 55096, updated on 27-Nov-2024

    Summary

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    Official Symbol
    EBLN2provided by HGNC
    Official Full Name
    endogenous Bornavirus like nucleoprotein 2provided by HGNC
    Primary source
    HGNC:HGNC:25493
    See related
    Ensembl:ENSG00000255423 MIM:613250; AllianceGenome:HGNC:25493
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EBLN-2
    Orthologs
    all
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    Genomic context

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    See EBLN2 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (73061659..73063337)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (73103153..73104831)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (73110810..73112488)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14534 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20097 Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:73077426-73077926 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:73077927-73078427 Neighboring gene RNA, U7 small nuclear 19 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73097059-73097560 Neighboring gene Sharpr-MPRA regulatory region 10785 Neighboring gene MPRA-validated peak4698 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20098 Neighboring gene small nucleolar RNA U13 Neighboring gene RNA, U6 small nuclear 557, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability. Fujino K, et al. J Virol, 2021 Jun 24. PMID 33952640, Free PMC Article
    2. Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes. Belyi VA, et al. PLoS Pathog, 2010 Jul 29. PMID 20686665, Free PMC Article
    3. Endogenous non-retroviral RNA virus elements in mammalian genomes. Horie M, et al. Nature, 2010 Jan 7. PMID 20054395, Free PMC Article
    4. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. Luo J, et al. Cell, 2009 May 29. PMID 19490893, Free PMC Article
    5. Large-scale mapping of human protein-protein interactions by mass spectrometry. Ewing RM, et al. Mol Syst Biol, 2007. PMID 17353931, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability.
      Title: A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ10213

    General protein information

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    Preferred Names
    endogenous Bornavirus-like nucleoprotein 2
    Names
    EBLN-1
    endogenous Borna-like N element-1
    endogenous Borna-like N element-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018029.4 → NP_060499.3  endogenous Bornavirus-like nucleoprotein 2

      See identical proteins and their annotated locations for NP_060499.3

      Status: VALIDATED

      Source sequence(s)
      AY036895, BC051316
      Consensus CDS
      CCDS54608.1
      UniProtKB/Swiss-Prot
      Q6P2I7, Q8WWH3, Q9NW89
      Related
      ENSP00000432104.1, ENST00000533473.1
      Conserved Domains (1) summary
      pfam06407
      Location:68 → 264
      BDV_P40; Borna disease virus P40 protein

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      73061659..73063337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      73103153..73104831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P2I7.1 GenPept UniProtKB/Swiss-Prot:Q6P2I7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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