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    ANKRD20A8P ankyrin repeat domain 20 family member A8, pseudogene [ Homo sapiens (human) ]

    Gene ID: 729171, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ANKRD20A8Pprovided by HGNC
    Official Full Name
    ankyrin repeat domain 20 family member A8, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:23666
    See related
    Ensembl:ENSG00000229089 AllianceGenome:HGNC:23666
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ANKRD20B
    Expression
    Biased expression in testis (RPKM 4.0), thyroid (RPKM 2.5) and 6 other tissues See more
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    Genomic context

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    See ANKRD20A8P in Genome Data Viewer
    Location:
    2q11.1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (94760928..94857075, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (95267447..95363598, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (95426673..95522820, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 114 pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 32, pseudogene Neighboring gene family with sequence similarity 95 member A Neighboring gene sorting nexin 18 pseudogene 14 Neighboring gene RNA, U6 small nuclear 1320, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:95535972-95536485 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:95536999-95537512 Neighboring gene SOWAHC pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:95539413-95540274 Neighboring gene uncharacterized LOC442028 Neighboring gene tektin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide DNA methylation changes in placenta tissues associated with small for gestational age newborns; cohort study in the Chinese population. Liu J, et al. Epigenomics, 2019 Sep. PMID 31596135
    2. Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry. Wheat A, et al. Proc Natl Acad Sci U S A, 2021 Aug 10. PMID 34349018, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • ankyrin repeat domain 20B
    • ankyrin repeat domain protein 18A pseudogene

    Clone Names

    • DKFZp686H1631

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003366.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073464, AC097374
      Related
      ENST00000432432.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      94760928..94857075 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      95267447..95363598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_005678.1: Suppressed sequence

      Description
      NG_005678.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5CZ79.2 GenPept UniProtKB/Swiss-Prot:Q5CZ79

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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