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    LSP1P4 LSP1 pseudogene 4 [ Homo sapiens (human) ]

    Gene ID: 654342, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LSP1P4provided by HGNC
    Official Full Name
    LSP1 pseudogene 4provided by HGNC
    Primary source
    HGNC:HGNC:53915
    See related
    Ensembl:ENSG00000291150 AllianceGenome:HGNC:53915
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in placenta (RPKM 15.8), kidney (RPKM 9.3) and 23 other tissues See more
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    Genomic context

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    See LSP1P4 in Genome Data Viewer
    Location:
    2p11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91636683..91659949, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91826407..91849675, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (91824709..91847975, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MAPK-interacting and spindle-stabilizing protein-like Neighboring gene OCT4 hESC enhancer GRCh37_chr2:91744009-91744510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91762682-91763600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91763601-91764518 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:91782891-91783056 Neighboring gene otopetrin 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91800405-91800908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91814909-91815410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91815411-91815910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91815988-91816557 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820030-91820530 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820531-91821031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91846385-91847216 Neighboring gene RNA, 5S ribosomal pseudogene 100 Neighboring gene dopamine receptor D5 pseudogene 1 Neighboring gene lysine methyltransferase 2C pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human and mouse LSP1 genes code for highly conserved phosphoproteins. Jongstra-Bilen J, et al. J Immunol, 1990 Feb 1. PMID 2295815
    2. Expression of mouse LSP1/S37 isoforms. S37 is expressed in embryonic mesenchymal cells. Misener VL, et al. J Cell Sci, 1994 Dec. PMID 7706408
    3. Human lymphocyte-specific pp52 gene is a member of a highly conserved dispersed family. May W, et al. Genomics, 1993 Mar. PMID 8468046
    4. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027238.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BF031534, BM826054
      Related
      ENST00000608018.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      91636683..91659949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      91826407..91849675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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