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    Ttc38 tetratricopeptide repeat domain 38 [ Mus musculus (house mouse) ]

    Gene ID: 239570, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Ttc38provided by MGI
    Official Full Name
    tetratricopeptide repeat domain 38provided by MGI
    Primary source
    MGI:MGI:2146198
    See related
    Ensembl:ENSMUSG00000035944 AllianceGenome:MGI:2146198
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9030019H09
    Summary
    Orthologous to human TTC38 (tetratricopeptide repeat domain 38). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in liver adult (RPKM 10.1), bladder adult (RPKM 8.2) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ttc38 in Genome Data Viewer
    Location:
    15 E2; 15 40.42 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85716545..85743023)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85832282..85858822)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5505 Neighboring gene cysteine rich, DPF motif domain containing 1 Neighboring gene polycystin (PKD) family receptor for egg jelly Neighboring gene STARR-seq mESC enhancer starr_39401 Neighboring gene G two S phase expressed protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E4144 Neighboring gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E10874

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. Carninci P, et al. Genome Res, 2003 Jun. PMID 12819125, Free PMC Article
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 38
    Names
    TPR repeat protein 38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033337.5 → NP_001028509.2  tetratricopeptide repeat protein 38 isoform 1

      See identical proteins and their annotated locations for NP_001028509.2

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513
      Consensus CDS
      CCDS27724.2
      UniProtKB/Swiss-Prot
      A3KMP2, Q05C02, Q05CK3, Q3UZU5
      Related
      ENSMUSP00000114504.2, ENSMUST00000146088.8
      Conserved Domains (1) summary
      cd05804
      Location:56 → 419
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...

    2. NM_001416054.1 → NP_001402983.1  tetratricopeptide repeat protein 38 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513

    3. NM_001416055.1 → NP_001402984.1  tetratricopeptide repeat protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513

    4. NM_001416056.1 → NP_001402985.1  tetratricopeptide repeat protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      85716545..85743023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520954.5 → XP_006521017.1  tetratricopeptide repeat protein 38 isoform X3

      Conserved Domains (1) summary
      cd05804
      Location:1 → 198
      StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3KMP2.2 GenPept UniProtKB/Swiss-Prot:A3KMP2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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