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    PRKCA-AS1 PRKCA antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928001, updated on 17-Sep-2024

    Summary

    Official Symbol
    PRKCA-AS1provided by HGNC
    Official Full Name
    PRKCA antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51347
    See related
    AllianceGenome:HGNC:51347
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See PRKCA-AS1 in Genome Data Viewer
    Location:
    17q24.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (66398069..66416854, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (67267789..67286611, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (64394187..64412972, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 14325 Neighboring gene RNA, 5S ribosomal pseudogene 444 Neighboring gene CRISPRi-validated cis-regulatory element chr17.4440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:64299525-64300026 Neighboring gene Sharpr-MPRA regulatory region 4334 Neighboring gene Sharpr-MPRA regulatory region 10613 Neighboring gene protein kinase C alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:64356585-64357085 Neighboring gene MPRA-validated peak2943 silencer Neighboring gene RNA, 7SL, cytoplasmic 735, pseudogene Neighboring gene Sharpr-MPRA regulatory region 12714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:64412459-64412958 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:64429852-64430049 Neighboring gene MPRA-validated peak2944 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12613 Neighboring gene Sharpr-MPRA regulatory region 4299 Neighboring gene Sharpr-MPRA regulatory region 12581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12614 Neighboring gene Sharpr-MPRA regulatory region 12401 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:64529308-64529848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8864 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:64544955-64545137 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:64547106-64547989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:64573678-64574638 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:64597839-64598492 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:64598493-64599144 Neighboring gene RNA, U6 small nuclear 928, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 445

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110822.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009452, BC033554, BG183684, CR745158

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      66398069..66416854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      67267789..67286611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)