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    ERICH2-DT ERICH2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101926913, updated on 10-Dec-2024

    Summary

    Official Symbol
    ERICH2-DTprovided by HGNC
    Official Full Name
    ERICH2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55686
    See related
    Ensembl:ENSG00000234350 AllianceGenome:HGNC:55686
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lung (RPKM 1.5), testis (RPKM 0.5) and 8 other tissues See more
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    Genomic context

    See ERICH2-DT in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (170700368..170770766, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (171177493..171247929, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (171556878..171627276, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene myosin IIIB Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:171196797-171197361 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:171210599-171211452 Neighboring gene Sharpr-MPRA regulatory region 12446 Neighboring gene MYO3B antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171292127-171292772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171292773-171293418 Neighboring gene uncharacterized LOC100130256 Neighboring gene NANOG hESC enhancer GRCh37_chr2:171508220-171508765 Neighboring gene high mobility group box 1 pseudogene 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171536815-171537364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171538465-171539014 Neighboring gene MPRA-validated peak3923 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12090 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171571431-171572220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171572221-171573008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171573009-171573798 Neighboring gene Sharpr-MPRA regulatory region 1892 Neighboring gene long intergenic non-protein coding RNA 1124 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12091 Neighboring gene eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 4 Neighboring gene Sp5 transcription factor Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12093 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_55930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:171674788-171675311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:171675312-171675834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171679351-171680150 Neighboring gene glutamate rich 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16744 Neighboring gene glutamate decarboxylase 1 Neighboring gene Sharpr-MPRA regulatory region 14 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12094 Neighboring gene golgi reassembly stacking protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110185.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007405
      Related
      ENST00000690230.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      170700368..170770766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      171177493..171247929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)