U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TMCO1-AS1 TMCO1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100147773, updated on 17-Sep-2024

    Summary

    Official Symbol
    TMCO1-AS1provided by HGNC
    Official Full Name
    TMCO1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:54046
    See related
    AllianceGenome:HGNC:54046
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in thyroid (RPKM 2.7), colon (RPKM 2.6) and 17 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TMCO1-AS1 in Genome Data Viewer
    Location:
    1q24.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (165768929..165775449)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165115010..165121532)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (165738166..165744686)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165667608-165668190 Neighboring gene carbonic anhydrase 14 pseudogene Neighboring gene MPRA-validated peak437 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2021 Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165737716-165738392 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165738393-165739068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1502 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:165797205-165797758 Neighboring gene ribosomal protein L26 pseudogene 12 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165812106-165812292 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165819835-165820049 Neighboring gene uridine-cytidine kinase 2 Neighboring gene Sharpr-MPRA regulatory region 1747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165830150-165830650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165830651-165831151 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2022 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:165867758-165868957 Neighboring gene Sharpr-MPRA regulatory region 10580 Neighboring gene microRNA 3658

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study and meta-analysis of intraocular pressure.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125374.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL451074

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      165768929..165775449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      165115010..165121532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)