ZNF585B zinc finger protein 585B [Homo sapiens (human)] - Gene

Summary

Official Symbol: ZNF585Bprovided by HGNC
Official Full Name: zinc finger protein 585Bprovided by HGNC
Primary source: HGNC:HGNC:30948
See related: Ensembl:ENSG00000245680 AllianceGenome:HGNC:30948
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: Zfp27; SZFP41
Summary: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression: Ubiquitous expression in thyroid (RPKM 4.3), ovary (RPKM 3.0) and 25 other tissues See more
Orthologs: all
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Genomic context

Location:: 19q13.12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	19	NC_000019.10 (37181579..37210536, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	19	NC_060943.1 (39856547..39885481, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	19	NC_000019.9 (37672481..37701438, complement)

Chromosome 19 - NC_000019.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

D11S2921 (e-PCR)
- UniSTS:152074

D10S275 (e-PCR)
- UniSTS:147992

SHGC-34082 (e-PCR)
- UniSTS:2345

D10S16 (e-PCR)
- UniSTS:155756

SGC34287 (e-PCR)
- UniSTS:32909

RH36079 (e-PCR)
- UniSTS:16563

RH17555 (e-PCR)
- UniSTS:30923

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger protein 585B

Names: zinc finger protein 41-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_152279.4 → NP_689492.3 zinc finger protein 585B

See identical proteins and their annotated locations for NP_689492.3

Status: VALIDATED

Source sequence(s)

AC012309, AY147015, BC093625, BX440867

Consensus CDS

CCDS12500.1

UniProtKB/Swiss-Prot

Q52M93, Q8IZD3, Q96JW6

Related

ENSP00000433773.1, ENST00000532828.7

Conserved Domains (5) summary

smart00349
Location:27 → 85

KRAB; krueppel associated box

COG5048
Location:156 → 529

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:664 → 684

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:27 → 66

KRAB; KRAB box

pfam13465
Location:705 → 729

zf-H2C2_2; Zinc-finger double domain