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    CBY3 chibby family member 3 [ Homo sapiens (human) ]

    Gene ID: 646019, updated on 17-Sep-2024

    Summary

    Official Symbol
    CBY3provided by HGNC
    Official Full Name
    chibby family member 3provided by HGNC
    Primary source
    HGNC:HGNC:33278
    See related
    Ensembl:ENSG00000204659 MIM:620892; AllianceGenome:HGNC:33278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.5), spleen (RPKM 0.4) and 18 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See CBY3 in Genome Data Viewer
    Location:
    5q35.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (179678560..179681034, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (180233744..180236219, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (179105561..179108035, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128966623 Neighboring gene chromosome 5 open reading frame 60-like Neighboring gene uncharacterized LOC105377763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:179105237-179105852 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23756 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23757 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:179131736-179132236 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:179132237-179132737 Neighboring gene calnexin Neighboring gene high mobility group box 3 pseudogene 22 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16733 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:179160227-179160727 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:179176749-179177249 Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23759 Neighboring gene MPRA-validated peak5609 silencer

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    protein chibby homolog 3
    Names
    chibby homolog 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164444.2NP_001157916.1  protein chibby homolog 3

      See identical proteins and their annotated locations for NP_001157916.1

      Status: VALIDATED

      Source sequence(s)
      AC136604, BX110582
      Consensus CDS
      CCDS47354.1
      UniProtKB/Swiss-Prot
      A6NI87
      Related
      ENSP00000366173.4, ENST00000376974.5
      Conserved Domains (1) summary
      pfam14645
      Location:94202
      Chibby; Chibby family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      179678560..179681034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047417524.1XP_047273480.1  protein chibby homolog 3 isoform X1

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_016107298.1 Reference GRCh38.p14 PATCHES

      Range
      444251..446726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      180233744..180236219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)