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    LINC01704 long intergenic non-protein coding RNA 1704 [ Homo sapiens (human) ]

    Gene ID: 646268, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01704provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1704provided by HGNC
    Primary source
    HGNC:HGNC:52492
    See related
    Ensembl:ENSG00000231666 AllianceGenome:HGNC:52492
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.0) See more
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    Genomic context

    See LINC01704 in Genome Data Viewer
    Location:
    1q23.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (158132044..158140640, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (157269132..157277737, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (158101834..158110430, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene kirre like nephrin family adhesion molecule 1 Neighboring gene KIRREL1 intronic transcript 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:158015378-158015910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:158025579-158026153 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:158063276-158064475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1448 Neighboring gene uncharacterized LOC105371460 Neighboring gene small integral membrane protein 42 Neighboring gene elongation factor for RNA polymerase II 2 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033946.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL138899, BC029599, DB032996
      Related
      ENST00000414848.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      158132044..158140640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      157269132..157277737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)