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    2310075C17Rik RIKEN cDNA 2310075C17 gene [ Mus musculus (house mouse) ]

    Gene ID: 70194, updated on 28-Oct-2024

    Summary

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    Official Symbol
    2310075C17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310075C17 geneprovided by MGI
    Primary source
    MGI:MGI:1917444
    See related
    AllianceGenome:MGI:1917444
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 1.7), cortex adult (RPKM 1.6) and 8 other tissues See more
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    Genomic context

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    See 2310075C17Rik in Genome Data Viewer
    Location:
    9 F3; 9 62.54 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (112056524..112057310)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (112227456..112228242)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39430 Neighboring gene cyclic AMP-regulated phosphoprotein, 21 Neighboring gene microRNA 128-2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112110378-112110659 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112121946-112122147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112127556-112127739 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112129224-112129377 Neighboring gene RIKEN cDNA 2900079G21 gene Neighboring gene STARR-seq mESC enhancer starr_25304 Neighboring gene STARR-seq mESC enhancer starr_25305 Neighboring gene predicted gene, 24957

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
    2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131053.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK010164, CR521484

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      112056524..112057310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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