U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Smbd1 somatomedin B domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 381043, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Smbd1provided by MGI
    Official Full Name
    somatomedin B domain containing 1provided by MGI
    Primary source
    MGI:MGI:2685779
    See related
    Ensembl:ENSMUSG00000094430 AllianceGenome:MGI:2685779
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm933; Gm1743
    Summary
    Orthologous to human SMBD1P (somatomedin B domain containing 1, pseudogene). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in genital fat pad adult (RPKM 10.1), duodenum adult (RPKM 2.0) and 4 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Smbd1 in Genome Data Viewer
    Location:
    16; 16 B3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (32625258..32630816, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (32804888..32810446, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene mucin 4 Neighboring gene predicted gene, 34825 Neighboring gene predicted gene, 53949 Neighboring gene STARR-seq mESC enhancer starr_40675 Neighboring gene mucin 20 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:32813070-32813253 Neighboring gene STARR-seq mESC enhancer starr_40677 Neighboring gene STARR-seq mESC enhancer starr_40678 Neighboring gene RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein Neighboring gene VISTA enhancer mm1352 Neighboring gene STARR-positive B cell enhancer mm9_chr16:32877901-32878201 Neighboring gene forty-two-three domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E9930 Neighboring gene STARR-positive B cell enhancer ABC_E8627 Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 3 Neighboring gene predicted gene 6611

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC381043

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256309.1 → NP_001243238.1  uncharacterized protein LOC381043 precursor

      Status: VALIDATED

      Source sequence(s)
      AI509129
      Consensus CDS
      CCDS57028.1
      UniProtKB/TrEMBL
      J3QPC1
      Related
      ENSMUSP00000137187.2, ENSMUST00000179384.3
      Conserved Domains (1) summary
      pfam01033
      Location:33 → 63
      Somatomedin_B; Somatomedin B domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      32625258..32630816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools