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    Rassf9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 [ Mus musculus (house mouse) ]

    Gene ID: 237504, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Rassf9provided by MGI
    Official Full Name
    Ras association (RalGDS/AF-6) domain family (N-terminal) member 9provided by MGI
    Primary source
    MGI:MGI:2384307
    See related
    Ensembl:ENSMUSG00000044921 AllianceGenome:MGI:2384307
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pamci
    Summary
    Predicted to enable enzyme binding activity and protein domain specific binding activity. Predicted to be involved in intracellular transport. Predicted to be located in endosome. Predicted to be active in cytosol; recycling endosome; and trans-Golgi network transport vesicle membrane. Is expressed in several structures, including metanephros; renal large blood vessel; respiratory system; sensory organ; and tooth. Orthologous to human RASSF9 (Ras association domain family member 9). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in lung adult (RPKM 1.5), heart adult (RPKM 1.1) and 19 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Rassf9 in Genome Data Viewer
    Location:
    10 D1; 10 53.56 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (102348083..102385598)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (102512222..102549737)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene MGAT4 family, member C Neighboring gene microRNA 3059 Neighboring gene STARR-seq mESC enhancer starr_27742 Neighboring gene STARR-seq mESC enhancer starr_27743 Neighboring gene STARR-seq mESC enhancer starr_27744 Neighboring gene STARR-seq mESC enhancer starr_27745 Neighboring gene neurotensin Neighboring gene predicted gene 5175 Neighboring gene predicted gene, 34298 Neighboring gene ALX homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A novel role of RASSF9 in maintaining epidermal homeostasis. Lee CM, et al. PLoS One, 2011 Mar 21. PMID 21445300, Free PMC Article
    2. Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Tamplin OJ, et al. Dev Biol, 2011 Dec 15. PMID 22008794
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC41694

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in endosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in endosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in recycling endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in recycling endosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in trans-Golgi network transport vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in trans-Golgi network transport vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in trans-Golgi network transport vesicle membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ras association domain-containing protein 9
    Names
    P-CIP1
    PAM COOH-terminal interactor protein 1
    peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146240.4 → NP_666352.1  ras association domain-containing protein 9

      See identical proteins and their annotated locations for NP_666352.1

      Status: PROVISIONAL

      Source sequence(s)
      AC131720, AC148992
      Consensus CDS
      CCDS36048.1
      UniProtKB/Swiss-Prot
      Q8BZV4, Q8K342
      Related
      ENSMUSP00000151843.2, ENSMUST00000219445.2
      Conserved Domains (1) summary
      smart00314
      Location:23 → 118
      RA; Ras association (RalGDS/AF-6) domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      102348083..102385598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155781.1 → XP_036011674.1  ras association domain-containing protein 9 isoform X2

    2. XM_006513632.5 → XP_006513695.1  ras association domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A1X7SB70
      Related
      ENSMUSP00000054767.6, ENSMUST00000055355.6
      Conserved Domains (1) summary
      cd16133
      Location:26 → 118
      RA_RASSF9; Ras-associating (RA) domain of N-terminal Ras-association domain family 9 (RASSF9)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K342.1 GenPept UniProtKB/Swiss-Prot:Q8K342

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
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