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    Ttc24 tetratricopeptide repeat domain 24 [ Mus musculus (house mouse) ]

    Gene ID: 214191, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ttc24provided by MGI
    Official Full Name
    tetratricopeptide repeat domain 24provided by MGI
    Primary source
    MGI:MGI:2443841
    See related
    Ensembl:ENSMUSG00000121872 AllianceGenome:MGI:2443841
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A430025D11Rik
    Summary
    Orthologous to human TTC24 (tetratricopeptide repeat domain 24). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 18.3) See more
    Orthologs
    human all
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    Genomic context

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    See Ttc24 in Genome Data Viewer
    Location:
    3 F1; 3 38.78 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (87976717..87985611, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88069410..88078304, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10191 Neighboring gene G patch domain containing 4 Neighboring gene NAD(P)HX epimerase Neighboring gene STARR-positive B cell enhancer ABC_E10192 Neighboring gene IQ motif containing GTPase activating protein 3 Neighboring gene STARR-positive B cell enhancer ABC_E10193 Neighboring gene STARR-positive B cell enhancer ABC_E1621 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:87942601-87942788 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:87945923-87946106 Neighboring gene STARR-positive B cell enhancer ABC_E2075 Neighboring gene myocyte enhancer factor 2D Neighboring gene RIKEN cDNA 1700113A16 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC58815

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 24
    Names
    TPR repeat protein 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172526.3 → NP_766114.1  tetratricopeptide repeat protein 24

      See identical proteins and their annotated locations for NP_766114.1

      Status: PROVISIONAL

      Source sequence(s)
      AC137525
      Consensus CDS
      CCDS17465.1
      UniProtKB/Swiss-Prot
      Q7TPM2, Q8BYG0
      UniProtKB/TrEMBL
      B9EJT8
      Related
      ENSMUST00000238487.2
      Conserved Domains (3) summary
      sd00006
      Location:72 → 100
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:152 → 184
      TPR_1; Tetratricopeptide repeat
      pfam13424
      Location:113 → 183
      TPR_12; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      87976717..87985611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BYG0.1 GenPept UniProtKB/Swiss-Prot:Q8BYG0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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