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    F730043M19Rik RIKEN cDNA F730043M19 gene [ Mus musculus (house mouse) ]

    Gene ID: 320046, updated on 28-Oct-2024

    Summary

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    Official Symbol
    F730043M19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA F730043M19 geneprovided by MGI
    Primary source
    MGI:MGI:2443237
    See related
    Ensembl:ENSMUSG00000052125 AllianceGenome:MGI:2443237
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 2.9), cortex adult (RPKM 2.4) and 23 other tissues See more
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    Genomic context

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    See F730043M19Rik in Genome Data Viewer
    Location:
    12 A3; 12 14.01 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (33161710..33197585, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (33111711..33147586, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40874 Neighboring gene predicted gene, 24922 Neighboring gene cadherin-related family member 3 Neighboring gene STARR-seq mESC enhancer starr_31887 Neighboring gene ataxin 7-like 1 Neighboring gene predicted gene, 38649 Neighboring gene STARR-positive B cell enhancer ABC_E11509 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:33987074-33987296 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:34000210-34000400 Neighboring gene ataxin 7-like 1, opposite strand 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015602.3 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC132354
      Related
      ENSMUST00000140105.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      33161710..33197585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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