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    VAC14-AS1 VAC14 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100130894, updated on 10-Dec-2024

    Summary

    Official Symbol
    VAC14-AS1provided by HGNC
    Official Full Name
    VAC14 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:48605
    See related
    Ensembl:ENSG00000214353 AllianceGenome:HGNC:48605
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See VAC14-AS1 in Genome Data Viewer
    Location:
    16q22.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (70755095..70773251)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (76566269..76584423)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (70788998..70807154)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70613305-70613810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70613811-70614316 Neighboring gene interleukin 34 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70655383-70655930 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:70655931-70656478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70683694-70684194 Neighboring gene MTSS I-BAR domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70721484-70721990 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70726089-70726916 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70726917-70727742 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70727743-70728568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70728569-70729394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70729395-70730221 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70731048-70731874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70731875-70732699 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70736831-70737596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70737597-70738364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70738365-70739130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70739131-70739896 Neighboring gene VAC14 component of PIKFYVE complex Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70748263-70748982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70750423-70751140 Neighboring gene Sharpr-MPRA regulatory region 12359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70771856-70772386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70774210-70775017 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70779970-70780470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70780471-70780971 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70781216-70781850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:70784627-70785306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70788515-70789155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:70789156-70789796 Neighboring gene tRNA-Gly (anticodon GCC) 3-1 Neighboring gene tRNA-Gly (anticodon GCC) 2-4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034083.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020763, KF456200
      Related
      ENST00000398177.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      70755095..70773251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      76566269..76584423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)