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    YMR046C gag protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855063, updated on 29-Jun-2024

    Summary

    Gene symbol
    YMR046C
    Gene description
    gag protein
    Primary source
    FungiDB:YMR046C
    Locus tag
    YMR046C
    See related
    SGD:S000004649; AllianceGenome:SGD:S000004649; VEuPathDB:YMR046C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See YMR046C in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (361305..362627, complement)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene transcription factor MCM1 Neighboring gene Ioc4p Neighboring gene gag-pol fusion protein Neighboring gene tRNA-His Neighboring gene FG-nucleoporin NUP116

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in viral translational frameshifting IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in retrotransposon nucleocapsid ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    gag protein
    NP_013760.1
    • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      361305..362627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182543.1NP_013760.1  TPA: gag protein [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013760.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VZM1, Q04215
      UniProtKB/TrEMBL
      A6ZL27
      Conserved Domains (1) summary
      pfam01021
      Location:17114
      TYA; TYA transposon protein