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    SCGB1B2P secretoglobin family 1B member 2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 643719, updated on 17-Sep-2024

    Summary

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    Official Symbol
    SCGB1B2Pprovided by HGNC
    Official Full Name
    secretoglobin family 1B member 2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:20741
    See related
    AllianceGenome:HGNC:20741
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SCGB4A1P
    Expression
    Ubiquitous expression in testis (RPKM 1.4), thyroid (RPKM 1.2) and 25 other tissues See more
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    Genomic context

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    See SCGB1B2P in Genome Data Viewer
    Location:
    19q13.11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (34576729..34677159, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (37121324..37221748, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (35067634..35168064, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26 pseudogene 55 Neighboring gene zinc finger protein 807, pseudogene Neighboring gene uncharacterized LOC105372374 Neighboring gene secretoglobin family 2B member 2 Neighboring gene zinc finger protein 530-like Neighboring gene secretoglobin family 2B member 3, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:35154774-35155274 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35167555-35168452 Neighboring gene secretoglobin family 1B member 3, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35168453-35169349 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35170207-35170708 Neighboring gene zinc finger protein 302 Neighboring gene secretoglobin family 2B member 1, pseudogene Neighboring gene secretoglobin family 1B member 1, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Jackson BC, et al. Hum Genomics, 2011 Oct. PMID 22155607, Free PMC Article
    2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • CTD-2378H7.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027620.4 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    2. NR_170957.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    3. NR_170958.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    4. NR_170959.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    5. NR_170960.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    6. NR_170961.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    7. NR_170962.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    8. NR_170963.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    9. NR_170964.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    10. NR_170965.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    11. NR_170966.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    12. NR_170967.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    13. NR_170968.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    14. NR_170969.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC020910, AC022143

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      34576729..34677159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      37121324..37221748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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