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    Gjd3 gap junction protein, delta 3 [ Mus musculus (house mouse) ]

    Gene ID: 353155, updated on 28-Oct-2024

    Summary

    Official Symbol
    Gjd3provided by MGI
    Official Full Name
    gap junction protein, delta 3provided by MGI
    Primary source
    MGI:MGI:2384150
    See related
    Ensembl:ENSMUSG00000047197 AllianceGenome:MGI:2384150
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cxnr; Gjc1; Gja11; cx30.2
    Summary
    Enables gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling and monoatomic ion channel activity. Involved in negative regulation of cell communication by electrical coupling involved in cardiac conduction and regulation of heart contraction. Located in gap junction. Part of connexin complex. Is expressed in atrioventricular canal; atrioventricular node; and heart. Orthologous to human GJD3 (gap junction protein delta 3). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    NEW
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    Genomic context

    See Gjd3 in Genome Data Viewer
    Location:
    11 D; 11 62.89 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (98870773..98873846, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (98979947..98983020, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene retinoic acid receptor, alpha Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:98803426-98803613 Neighboring gene STARR-positive B cell enhancer ABC_E9373 Neighboring gene predicted gene, 46294 Neighboring gene STARR-seq mESC enhancer starr_30692 Neighboring gene predicted gene, 22061 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:98824669-98824852 Neighboring gene STARR-seq mESC enhancer starr_30695 Neighboring gene topoisomerase (DNA) II alpha Neighboring gene STARR-positive B cell enhancer ABC_E17 Neighboring gene predicted gene, 23451 Neighboring gene insulin-like growth factor binding protein 4

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell surface ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of connexin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of connexin complex IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    part_of connexin complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of connexin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in gap junction IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    gap junction delta-3 protein
    Names
    connexin 30.2
    connexin r
    gap junction alpha-11 protein
    gap junction chi-1 protein
    gap junction membrane channel protein chi 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178596.3NP_848711.2  gap junction delta-3 protein

      See identical proteins and their annotated locations for NP_848711.2

      Status: VALIDATED

      Source sequence(s)
      AL591067
      Consensus CDS
      CCDS25369.1
      UniProtKB/Swiss-Prot
      Q80ZH0, Q91YD1
      UniProtKB/TrEMBL
      A0A654IET7
      Related
      ENSMUSP00000055246.2, ENSMUST00000062931.2
      Conserved Domains (1) summary
      pfam00029
      Location:3214
      Connexin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      98870773..98873846 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)