U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DALRD3 DALR anticodon binding domain containing 3 [ Homo sapiens (human) ]

    Gene ID: 55152, updated on 3-Dec-2024

    Summary

    Official Symbol
    DALRD3provided by HGNC
    Official Full Name
    DALR anticodon binding domain containing 3provided by HGNC
    Primary source
    HGNC:HGNC:25536
    See related
    Ensembl:ENSG00000178149 MIM:618904; AllianceGenome:HGNC:25536
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DEE86; EIEE86
    Summary
    The exact function of this gene is not known. It encodes a protein with a DALR anticodon binding domain similar to that of class Ia aminoacyl tRNA synthetases. This gene is located in a cluster of genes (with a complex sense-anti-sense genome architecture) on chromosome 3, and contains two micro RNA (miRNA) precursors (mir-425 and mir-191) in one of its introns. Preferential expression of this gene (the miRNAs and other genes in the cluster) in testis suggests a role of this gene in spermatogenesis (PMID:19906709). [provided by RefSeq, Feb 2013]
    Expression
    Ubiquitous expression in testis (RPKM 22.8), prostate (RPKM 21.2) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See DALRD3 in Genome Data Viewer
    Location:
    3p21.31
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (49015488..49021505, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (49043528..49049545, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (49052921..49058938, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC124909376 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:49026394-49026957 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:49026958-49027520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14344 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:49028085-49028646 Neighboring gene uncharacterized LOC124906235 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49043602-49044590 Neighboring gene prolyl 4-hydroxylase, transmembrane Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14345 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:49051026-49051863 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49054789-49055560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19849 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49058641-49059410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14349 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14350 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14352 Neighboring gene WD repeat domain 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49065964-49066566 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:49066567-49067168 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 3 Neighboring gene microRNA 425 Neighboring gene microRNA 191 Neighboring gene inosine monophosphate dehydrogenase 2 Neighboring gene glutamine rich 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:49097169-49097668 Neighboring gene RNA, 7SL, cytoplasmic 182, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ10496

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables arginine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables tRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables tRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in arginyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in tRNA C3-cytosine methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in tRNA C3-cytosine methylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    DALR anticodon-binding domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_033126.1 RefSeqGene

      Range
      7492..10584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001009996.3NP_001009996.1  DALR anticodon-binding domain-containing protein 3 isoform 1

      See identical proteins and their annotated locations for NP_001009996.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      BC047683, DB045082
      Consensus CDS
      CCDS33754.1
      UniProtKB/Swiss-Prot
      Q5D0E6, Q7Z5S7, Q86WY1, Q8N105, Q8NA89, Q9NVU8
      UniProtKB/TrEMBL
      B7Z727
      Related
      ENSP00000344989.4, ENST00000341949.9
      Conserved Domains (1) summary
      smart00836
      Location:403543
      DALR_1; DALR anticodon binding domain
    2. NM_001276405.2NP_001263334.1  DALR anticodon-binding domain-containing protein 3 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate acceptor splice site at an internal exon in the 3' coding region that causes a frameshift, compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC137630, BC054493, DB045082
      Consensus CDS
      CCDS63632.1
      UniProtKB/TrEMBL
      B7Z727
      Related
      ENSP00000410623.2, ENST00000441576.6
    3. NM_018114.6NP_060584.3  DALR anticodon-binding domain-containing protein 3 isoform 2

      See identical proteins and their annotated locations for NP_060584.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 5' terminal exon and uses an in-frame downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AC137630, AK093204, BC054493, HY047953
      Consensus CDS
      CCDS2783.1
      UniProtKB/TrEMBL
      C9JJG6
      Related
      ENSP00000323265.5, ENST00000313778.9
      Conserved Domains (1) summary
      smart00836
      Location:236376
      DALR_1; DALR anticodon binding domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      49015488..49021505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017006723.2XP_016862212.1  DALR anticodon-binding domain-containing protein 3 isoform X6

      UniProtKB/TrEMBL
      C9JJG6
    2. XM_047448438.1XP_047304394.1  DALR anticodon-binding domain-containing protein 3 isoform X5

      UniProtKB/TrEMBL
      C9JJG6
      Related
      ENSP00000403770.1, ENST00000440857.5
    3. XM_006713219.3XP_006713282.1  DALR anticodon-binding domain-containing protein 3 isoform X4

      See identical proteins and their annotated locations for XP_006713282.1

      Conserved Domains (1) summary
      smart00836
      Location:236408
      DALR_1; DALR anticodon binding domain
    4. XM_047448437.1XP_047304393.1  DALR anticodon-binding domain-containing protein 3 isoform X3

      UniProtKB/Swiss-Prot
      Q5D0E6, Q7Z5S7, Q86WY1, Q8N105, Q8NA89, Q9NVU8
      UniProtKB/TrEMBL
      B7Z727
    5. XM_047448436.1XP_047304392.1  DALR anticodon-binding domain-containing protein 3 isoform X1

    6. XM_011533891.3XP_011532193.1  DALR anticodon-binding domain-containing protein 3 isoform X2

      Conserved Domains (1) summary
      cl12020
      Location:403464
      Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains
    7. XM_011533893.3XP_011532195.1  DALR anticodon-binding domain-containing protein 3 isoform X7

      UniProtKB/TrEMBL
      C9JA38
      Related
      ENSP00000397385.2, ENST00000420952.2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      49043528..49049545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054347061.1XP_054203036.1  DALR anticodon-binding domain-containing protein 3 isoform X6

      UniProtKB/TrEMBL
      C9JJG6
    2. XM_054347060.1XP_054203035.1  DALR anticodon-binding domain-containing protein 3 isoform X5

      UniProtKB/TrEMBL
      C9JJG6
    3. XM_054347059.1XP_054203034.1  DALR anticodon-binding domain-containing protein 3 isoform X4

    4. XM_054347058.1XP_054203033.1  DALR anticodon-binding domain-containing protein 3 isoform X3

      UniProtKB/TrEMBL
      B7Z727
    5. XM_054347056.1XP_054203031.1  DALR anticodon-binding domain-containing protein 3 isoform X1

    6. XM_054347057.1XP_054203032.1  DALR anticodon-binding domain-containing protein 3 isoform X2

    7. XM_054347062.1XP_054203037.1  DALR anticodon-binding domain-containing protein 3 isoform X7

      UniProtKB/TrEMBL
      C9JA38