U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC03103 long intergenic non-protein coding RNA 3103 [ Homo sapiens (human) ]

    Gene ID: 100507527, updated on 17-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC03103provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3103provided by HGNC
    Primary source
    HGNC:HGNC:48330
    See related
    Ensembl:ENSG00000267465
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    THEG5
    Expression
    Restricted expression toward testis (RPKM 3.1) See more
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC03103 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (31588174..31593785)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (34106779..34112390)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (32079080..32084691)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene TSHZ3 antisense RNA 1 Neighboring gene uncharacterized LOC124904794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31879539-31880040 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:31909131-31910077 Neighboring gene Sharpr-MPRA regulatory region 8466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31939361-31939861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31990532-31991116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31991117-31991701 Neighboring gene long intergenic non-protein coding RNA 2841 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:32043944-32045143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:32065114-32065673 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:32129182-32129347 Neighboring gene RNA, 5S ribosomal pseudogene 471 Neighboring gene uncharacterized LOC105372361

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Homology

    Other Names

    • testis highly expressed protein 5

    Clone Names

    • AC011525.4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172934.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000592788.6

    2. NR_172935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000664056.1

    3. NR_172936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000655260.1

    4. NR_172937.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011525
      Related
      ENST00000663546.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      31588174..31593785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      34106779..34112390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001205273.3: Suppressed sequence

      Description
      NM_001205273.3: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    2. NM_001278575.3: Suppressed sequence

      Description
      NM_001278575.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_001278576.3: Suppressed sequence

      Description
      NM_001278576.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    4. NM_001278577.3: Suppressed sequence

      Description
      NM_001278577.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    5. NM_001278578.3: Suppressed sequence

      Description
      NM_001278578.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials