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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_030791.1 Reference assembly
- Range
-
340..9381
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_009272536.1 polyprotein [Hepatitis C virus genotype 7]
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
A8QPD9
- Conserved Domains (16) summary
-
- pfam01001
Location:1732 → 1925
- HCV_NS4b; Hepatitis C virus non-structural protein NS4b
- pfam01539
Location:193 → 382
- HCV_env; Hepatitis C virus envelope glycoprotein E1
- pfam01560
Location:388 → 733
- HCV_NS1; Hepatitis C virus non-structural protein E2/NS1
- pfam02907
Location:1060 → 1205
- Peptidase_S29; Hepatitis C virus NS3 protease
- pfam01543
Location:2 → 115
- HCV_capsid; Hepatitis C virus capsid protein
- pfam08301
Location:2072 → 2172
- HCV_NS5a_1b; Hepatitis C virus non-structural 5a domain 1b
- pfam01538
Location:815 → 1009
- HCV_NS2; Hepatitis C virus non-structural protein NS2
- smart00487
Location:1221 → 1359
- DEXDc; DEAD-like helicases superfamily
- cd00046
Location:1228 → 1355
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1382 → 1459
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- pfam00998
Location:2425 → 2936
- RdRP_3; Viral RNA dependent RNA polymerase
- pfam01006
Location:1662 → 1715
- HCV_NS4a; Hepatitis C virus non-structural protein NS4a
- pfam01506
Location:1978 → 2000
- HCV_NS5a; Hepatitis C virus non-structural 5a protein membrane anchor
- pfam01542
Location:116 → 190
- HCV_core; Hepatitis C virus core protein
- pfam08300
Location:2010 → 2071
- HCV_NS5a_1a; Hepatitis C virus non-structural 5a zinc finger domain
- pfam12941
Location:2183 → 2422
- HCV_NS5a_C; HCV NS5a protein C-terminal region
-
YP_009272680.1 core protein
-
YP_009272681.1 E1 protein
-
YP_009272682.1 E2 protein
-
YP_009272683.1 p7 protein
-
YP_009272684.1 NS2 protein
-
YP_009272685.1 NS3 protease/helicase
-
YP_009272686.1 NS4A protein
-
YP_009272687.1 NS4B protein
-
YP_009272688.1 NS5A protein
-
YP_009272689.1 NS5B RNA-dependent RNA polymerase
-
YP_009305096.1 protein F [Hepatitis C virus genotype 7]
Status: PROVISIONAL