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    LOC100273470 meiotic recombination protein DMC1 [ Zea mays ]

    Gene ID: 100273470, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100273470
    Gene description
    meiotic recombination protein DMC1
    Locus tag
    ZEAMMB73_Zm00001d044629
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    Dmc1; GRMZM2G109618
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    Genomic context

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    See LOC100273470 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (235455859..235460581)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (233608698..233613420)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene cation/H(+) antiporter 15 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene suppressor of mec-8 and unc-52 protein homolog 2 Neighboring gene ubiquitin-like protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA strand exchange activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombinase assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA strand invasion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromosome organization involved in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    meiotic recombination protein DMC1
    Names
    DNA meiotic recombinase 1
    meiosis-specific recombinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001147907.1 → NP_001141379.1  meiotic recombination protein DMC1

      See identical proteins and their annotated locations for NP_001141379.1

      Status: PROVISIONAL

      Source sequence(s)
      BT041201
      UniProtKB/TrEMBL
      A0A1P8W054, A0A1P8W058, A0A1P8W060, A0A1P8W064, A0A1P8W069, A0A1P8W080, A0A1P8W086, A0A1P8W087, A0A8F9WMK3, A0A8F9WNN3, B4FMC1, G5CCL9
      Conserved Domains (1) summary
      PLN03187
      Location:1 → 344
      PLN03187; meiotic recombination protein DMC1 homolog; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      235455859..235460581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008674216.3 → XP_008672438.1  meiotic recombination protein DMC1 isoform X1

      See identical proteins and their annotated locations for XP_008672438.1

      UniProtKB/TrEMBL
      A0A1P8W054, A0A1P8W058, A0A1P8W060, A0A1P8W064, A0A1P8W069, A0A1P8W080, A0A1P8W086, A0A1P8W087, A0A8F9WMK3, A0A8F9WNN3, B4FMC1, G5CCL9
      Conserved Domains (1) summary
      PLN03187
      Location:1 → 344
      PLN03187; meiotic recombination protein DMC1 homolog; Provisional

    2. XM_008674217.3 → XP_008672439.1  meiotic recombination protein DMC1 isoform X2

      See identical proteins and their annotated locations for XP_008672439.1

      UniProtKB/TrEMBL
      A0A1P8W054, A0A1P8W058, A0A1P8W060, A0A1P8W064, A0A1P8W080, A0A804NIS5, A0A8F9WMK3, A0A8F9WNN3, G5CCL9
      Conserved Domains (2) summary
      PLN03187
      Location:1 → 342
      PLN03187; meiotic recombination protein DMC1 homolog; Provisional
      cd01123
      Location:106 → 337
      Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    Nucleotide Protein
    Heading Accession and Version

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