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    zbed4.S zinc finger, BED-type containing 4 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108713089, updated on 7-Sep-2023

    Summary

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    Official Symbol
    zbed4.S
    Official Full Name
    zinc finger, BED-type containing 4 S homeolog
    Primary source
    Xenbase:XB-GENE-17339076
    Locus tag
    XELAEV_18021020mg
    See related
    EnsemblRapid:ENSXLAG00005008175
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ZBED4
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    Genomic context

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    See zbed4.S in Genome Data Viewer
    Location:
    chromosome: 3S
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (76576175..76590396)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (75154017..75168016)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene TAFA chemokine like family member 5 S homeolog Neighboring gene bromodomain containing 1 S homeolog Neighboring gene cysteine rich with EGF-like domains 2 S homeolog Neighboring gene Pim-3 proto-oncogene, serine/threonine kinase S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      76576175..76590396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018255818.2 → XP_018111307.1  zinc finger BED domain-containing protein 4

      UniProtKB/TrEMBL
      A0A1L8GTY3, A0A974D8Q9
      Related
      ENSXLAP00005023470.1, ENSXLAT00005024175.1
      Conserved Domains (2) summary
      pfam02892
      Location:103 → 151
      zf-BED; BED zinc finger
      pfam05699
      Location:1058 → 1134
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    2. XM_018255820.2 → XP_018111309.1  zinc finger BED domain-containing protein 4

      UniProtKB/TrEMBL
      A0A1L8GTY3, A0A974D8Q9
      Related
      ENSXLAP00005023482.1, ENSXLAT00005024187.1
      Conserved Domains (2) summary
      pfam02892
      Location:103 → 151
      zf-BED; BED zinc finger
      pfam05699
      Location:1058 → 1134
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    3. XM_018255817.2 → XP_018111306.1  zinc finger BED domain-containing protein 4

      UniProtKB/TrEMBL
      A0A1L8GTY3, A0A974D8Q9
      Related
      ENSXLAP00005023477.1, ENSXLAT00005024183.1
      Conserved Domains (2) summary
      pfam02892
      Location:103 → 151
      zf-BED; BED zinc finger
      pfam05699
      Location:1058 → 1134
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    4. XM_018255819.2 → XP_018111308.1  zinc finger BED domain-containing protein 4

      UniProtKB/TrEMBL
      A0A1L8GTY3, A0A974D8Q9
      Related
      ENSXLAP00005023455.1, ENSXLAT00005024160.1
      Conserved Domains (2) summary
      pfam02892
      Location:103 → 151
      zf-BED; BED zinc finger
      pfam05699
      Location:1058 → 1134
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    5. XM_041588517.1 → XP_041444451.1  zinc finger BED domain-containing protein 4

      UniProtKB/TrEMBL
      A0A1L8GTY3, A0A974D8Q9
      Related
      ENSXLAP00005023466.1, ENSXLAT00005024171.1
      Conserved Domains (2) summary
      pfam02892
      Location:103 → 151
      zf-BED; BED zinc finger
      pfam05699
      Location:1058 → 1134
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    Nucleotide Protein Strain
    Heading Accession and Version

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