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    LOC101762730 nuclear pore complex protein NUP85 [ Setaria italica (foxtail millet) ]

    Gene ID: 101762730, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101762730
    Gene description
    nuclear pore complex protein NUP85
    Locus tag
    SETIT_000455mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101762730 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (36641671..36649193)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (36642506..36649988)

    Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 12 Neighboring gene zinc finger CCCH domain-containing protein 19 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A Neighboring gene chaperone protein ClpB1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein NUP85

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      36641671..36649193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004969871.3 → XP_004969928.1  nuclear pore complex protein NUP85

      UniProtKB/TrEMBL
      K3XEY8
      Conserved Domains (1) summary
      pfam07575
      Location:99 → 689
      Nucleopor_Nup85; Nup85 Nucleoporin
    Nucleotide Protein Strain
    Heading Accession and Version

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