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    SNHG12 small nucleolar RNA host gene 12 [ Homo sapiens (human) ]

    Gene ID: 85028, updated on 2-Nov-2024

    Summary

    Official Symbol
    SNHG12provided by HGNC
    Official Full Name
    small nucleolar RNA host gene 12provided by HGNC
    Primary source
    HGNC:HGNC:30062
    See related
    Ensembl:ENSG00000197989 AllianceGenome:HGNC:30062
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf79; PNAS-123; LINC00100; ASLNC04080; NCRNA00100
    Summary
    This gene produces a long RNA that is overexpressed in tumor cells. This RNA may promote tumorigenesis by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]
    Expression
    Ubiquitous expression in appendix (RPKM 11.0), spleen (RPKM 10.5) and 25 other tissues See more
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    Genomic context

    See SNHG12 in Genome Data Viewer
    Location:
    1p35.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (28578538..28582983, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (28420494..28424939, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (28905050..28909495, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28844515-28845366 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28845367-28846217 Neighboring gene regulator of chromosome condensation 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28850571-28851072 Neighboring gene peroxiredoxin 3 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:28866050-28866550 Neighboring gene Sharpr-MPRA regulatory region 11844 Neighboring gene Sharpr-MPRA regulatory region 11894 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28907091-28907876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28907877-28908662 Neighboring gene small nucleolar RNA, C/D box 99 Neighboring gene small nucleolar RNA, H/ACA box 16A Neighboring gene small nucleolar RNA, H/ACA box 61 Neighboring gene small nucleolar RNA, H/ACA box 44 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:28919769-28920505 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:28925585-28926166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:28928951-28929451 Neighboring gene RAB42, member RAS oncogene family Neighboring gene TATA-box binding protein associated factor 12 Neighboring gene Sharpr-MPRA regulatory region 12118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:28971631-28972130 Neighboring gene TAF12 divergent transcript

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 100
    • small nucleolar RNA host gene 12 (non-protein coding)

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024127.2 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      BC068048, CB128668
      Related
      ENST00000475441.7
    2. NR_146381.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      BC045792, CB128668
      Related
      ENST00000470977.6
    3. NR_146382.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      BC022205, BC045792
      Related
      ENST00000488745.5
    4. NR_146383.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      BC045792, BU947373, CB128668
      Related
      ENST00000531126.8
    5. NR_146384.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL513497
      Related
      ENST00000461832.3
    6. NR_146385.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL513497
      Related
      ENST00000481220.6
    7. NR_146386.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL513497
      Related
      ENST00000483436.6
    8. NR_146387.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL513497
      Related
      ENST00000775065.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      28578538..28582983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      28420494..28424939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)