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    Gm16136 predicted gene 16136 [ Mus musculus (house mouse) ]

    Gene ID: 105245924, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm16136provided by MGI
    Official Full Name
    predicted gene 16136provided by MGI
    Primary source
    MGI:MGI:3802137
    See related
    Ensembl:ENSMUSG00000089804 AllianceGenome:MGI:3802137
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in bladder adult (RPKM 35.5), genital fat pad adult (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    See Gm16136 in Genome Data Viewer
    Location:
    15 14.84 cM; 15 B3.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (37232165..37233403, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (37231921..37233159, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene predicted gene, 41303 Neighboring gene STARR-seq mESC enhancer starr_38416 Neighboring gene STARR-seq mESC enhancer starr_38417 Neighboring gene grainyhead like transcription factor 2 Neighboring gene STARR-seq mESC enhancer starr_38421 Neighboring gene STARR-seq mESC enhancer starr_38423 Neighboring gene RIKEN cDNA 4930447A16 gene Neighboring gene neurocalcin delta Neighboring gene predicted gene 15941 Neighboring gene nucleus accumbens-associated protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele. Crane-Smith Z, et al. Hum Mol Genet, 2023 Aug 26. PMID 37364051, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • AC114008.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_155441.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC114008, AC159003
      Related
      ENSMUST00000162520.3

    2. NR_155442.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC114008, AC159003
      Related
      ENSMUST00000159411.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      37232165..37233403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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