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    PT4 non-structure protein 1;non-structure protein 2;non-structure protein 3 [ Porcine parvovirus ]

    Gene ID: 1489594, updated on 6-Oct-2023

    Summary

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    Gene symbol
    PT4
    Gene description
    non-structure protein 1;non-structure protein 2;non-structure protein 3
    Locus tag
    PPVgp1
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Porcine parvovirus (strain: NADL-2)
    Lineage
    Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Protoparvovirus
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    Genomic context

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    Sequence:
    NC_001718.1 (225..4833)

    NC_001718.1Genomic Context describing neighboring genes Neighboring gene capsid protein 1;capsid protein 2 Neighboring gene SAT protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001718.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The epitope of the VP1 protein of porcine parvovirus. Xie HL, et al. Virol J, 2010 Jul 16. PMID 20637107, Free PMC Article
    2. SYNCRIP facilitates porcine parvovirus viral DNA replication through the alternative splicing of NS1 mRNA to promote NS2 mRNA formation. Chen S, et al. Vet Res, 2021 May 25. PMID 34034820, Free PMC Article
    3. Genomic organization and mapping of transcription and translation products of the NADL-2 strain of porcine parvovirus. Bergeron J, et al. Virology, 1993 Nov. PMID 8212598

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SYNCRIP facilitates porcine parvovirus viral DNA replication through the alternative splicing of NS1 mRNA to promote NS2 mRNA formation.
      Title: SYNCRIP facilitates porcine parvovirus viral DNA replication through the alternative splicing of NS1 mRNA to promote NS2 mRNA formation.
    2. The epitope of VP1 is located in the N-terminal and contains the role amino acid sequence R-K-R.
      Title: The epitope of the VP1 protein of porcine parvovirus.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    polyA_site

    • Loc: 4833

    regulatory

    • Loc: 2004-2011 regulatory_class = TATA_box
    • Loc: 4813-4818 regulatory_class = polyA_signal_sequence

    General protein information

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    Preferred Names
    non-structure protein 1;non-structure protein 2;non-structure protein 3
    NP_757368.1

    VOG classification

    Description:

    • VOGs0109 [L] Parvoviridae non-structural proteins NS1/Rep
    • DNA Replication, Repair and Nucleotide Metabolism
    NP_757369.1

    VOG classification

    Description:

    • VOGs0109 [L] Parvoviridae non-structural proteins NS1/Rep
    • DNA Replication, Repair and Nucleotide Metabolism
    NP_757370.1

    VOG classification

    Description:

    • VOGs0109 [L] Parvoviridae non-structural proteins NS1/Rep
    • DNA Replication, Repair and Nucleotide Metabolism

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001718.1 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_757368.1 non-structure protein 3 [Porcine parvovirus]

      See identical proteins and their annotated locations for NP_757368.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E2D6U0, Q32Z67, Q84904, U5YQ06

    2. NP_757369.1 non-structure protein 1 [Porcine parvovirus]

      See identical proteins and their annotated locations for NP_757369.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P52502
      UniProtKB/TrEMBL
      A0A8E9ZV00, C3VAB8, Q4G3U4, U5YTF7
      Conserved Domains (4) summary
      pfam08724
      Location:105 → 138
      Rep_N; Rep protein catalytic domain like
      pfam01057
      Location:276 → 546
      Parvo_NS1; Parvovirus non-structural protein NS1
      pfam12117
      Location:553 → 652
      DUF3580; Protein of unknown function (DUF3580)
      pfam12433
      Location:186 → 257
      PV_NSP1; Parvovirus non-structural protein 1

    3. NP_757370.1 non-structure protein 2 [Porcine parvovirus]

      See identical proteins and their annotated locations for NP_757370.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E2D6V7, Q0PWW2, Q32Z74, Q84905, R4JL74, U5YR01
    Nucleotide Protein
    Heading Accession and Version

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