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    SEMA3D semaphorin 3D [ Vulpes vulpes (red fox) ]

    Gene ID: 112910179, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SEMA3D
    Gene description
    semaphorin 3D
    See related
    Ensembl:ENSVVUG00000018959
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356656.1 (932736..1066746)

    NW_020356656.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene SCY1-like protein 2 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356656 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-3D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356656.1 Reference VulVul2.2 Primary Assembly

      Range
      932736..1066746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025986422.1 → XP_025842207.1  semaphorin-3D

      UniProtKB/TrEMBL
      A0A3Q7R9N8
      Related
      ENSVVUP00000025817.1, ENSVVUT00000034242.1
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
    Nucleotide Protein Strain
    Heading Accession and Version

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