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    D1T87_gp1 polyprotein [ Daphne virus Y ]

    Gene ID: 37619843, updated on 18-Aug-2023

    Summary

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    Gene symbol
    D1T87_gp1
    Gene description
    polyprotein
    Locus tag
    D1T87_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Daphne virus Y (isolate: SK, nat-host: Daphne odora Thunb.)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus; unclassified Potyvirus
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    Genomic context

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    Sequence:
    NC_038984.1 (117..9314)

    NC_038984.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038984.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    P1
    HC-Pro
    P3
    6K1
    CI
    6K2
    VPg
    NIa
    NIb
    CP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_038984.1 Reference assembly

      Range
      117..9314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009508399.1 polyprotein [Daphne virus Y]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A142JYQ3
      Conserved Domains (9) summary
      smart00487
      Location:1233 → 1383
      DEXDc; DEAD-like helicases superfamily
      pfam01577
      Location:90 → 295
      Peptidase_S30; Potyvirus P1 protease
      pfam00767
      Location:2831 → 3063
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:318 → 754
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2026 → 2257
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1536 → 1809
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:767 → 1202
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      cl02808
      Location:2298 → 2758
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      pfam00271
      Location:1394 → 1511
      Helicase_C; Helicase conserved C-terminal domain

    2. YP_009509098.1 P1

      Conserved Domains (1) summary
      pfam01577
      Location:90 → 295
      Peptidase_S30; Potyvirus P1 protease

    3. YP_009509099.1 HC-Pro

      Conserved Domains (1) summary
      pfam00851
      Location:22 → 458
      Peptidase_C6; Helper component proteinase

    4. YP_009509100.1 P3

      Conserved Domains (1) summary
      pfam13608
      Location:13 → 308
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    5. YP_009509101.1 6K1

      Conserved Domains (1) summary
      pfam13608
      Location:1 → 52
      Potyvirid-P3; Protein P3 of Potyviral polyprotein

    6. YP_009509102.1 CI

      Conserved Domains (4) summary
      smart00487
      Location:82 → 232
      DEXDc; DEAD-like helicases superfamily
      pfam08440
      Location:385 → 635
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:1 → 51
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      pfam00271
      Location:243 → 360
      Helicase_C; Helicase conserved C-terminal domain

    7. YP_009509103.1 6K2

    8. YP_009509104.1 VPg

    9. YP_009509105.1 NIa

      Conserved Domains (1) summary
      pfam00863
      Location:2 → 230
      Peptidase_C4; Peptidase family C4

    10. YP_009509106.1 NIb

      Conserved Domains (1) summary
      cl02808
      Location:28 → 488
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

    11. YP_009509107.1 CP

      UniProtKB/TrEMBL
      A0A6B9VNU2
      Conserved Domains (1) summary
      pfam00767
      Location:37 → 269
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
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