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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_038984.1 Reference assembly
- Range
-
117..9314
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_009508399.1 polyprotein [Daphne virus Y]
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
A0A142JYQ3
- Conserved Domains (9) summary
-
- smart00487
Location:1233 → 1383
- DEXDc; DEAD-like helicases superfamily
- pfam01577
Location:90 → 295
- Peptidase_S30; Potyvirus P1 protease
- pfam00767
Location:2831 → 3063
- Poty_coat; Potyvirus coat protein
- pfam00851
Location:318 → 754
- Peptidase_C6; Helper component proteinase
- pfam00863
Location:2026 → 2257
- Peptidase_C4; Peptidase family C4
- pfam08440
Location:1536 → 1809
- Poty_PP; Potyviridae polyprotein
- pfam13608
Location:767 → 1202
- Potyvirid-P3; Protein P3 of Potyviral polyprotein
- cl02808
Location:2298 → 2758
- RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
- pfam00271
Location:1394 → 1511
- Helicase_C; Helicase conserved C-terminal domain
-
YP_009509098.1 P1
- Conserved Domains (1) summary
-
- pfam01577
Location:90 → 295
- Peptidase_S30; Potyvirus P1 protease
-
YP_009509099.1 HC-Pro
- Conserved Domains (1) summary
-
- pfam00851
Location:22 → 458
- Peptidase_C6; Helper component proteinase
-
YP_009509100.1 P3
- Conserved Domains (1) summary
-
- pfam13608
Location:13 → 308
- Potyvirid-P3; Protein P3 of Potyviral polyprotein
-
YP_009509101.1 6K1
- Conserved Domains (1) summary
-
- pfam13608
Location:1 → 52
- Potyvirid-P3; Protein P3 of Potyviral polyprotein
-
YP_009509102.1 CI
- Conserved Domains (4) summary
-
- smart00487
Location:82 → 232
- DEXDc; DEAD-like helicases superfamily
- pfam08440
Location:385 → 635
- Poty_PP; Potyviridae polyprotein
- pfam13608
Location:1 → 51
- Potyvirid-P3; Protein P3 of Potyviral polyprotein
- pfam00271
Location:243 → 360
- Helicase_C; Helicase conserved C-terminal domain
-
YP_009509103.1 6K2
-
YP_009509104.1 VPg
-
YP_009509105.1 NIa
- Conserved Domains (1) summary
-
- pfam00863
Location:2 → 230
- Peptidase_C4; Peptidase family C4
-
YP_009509106.1 NIb
- Conserved Domains (1) summary
-
- cl02808
Location:28 → 488
- RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
-
YP_009509107.1 CP
- UniProtKB/TrEMBL
-
A0A6B9VNU2
- Conserved Domains (1) summary
-
- pfam00767
Location:37 → 269
- Poty_coat; Potyvirus coat protein