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    FK880_gp1 polyprotein [ Alternanthera mild mosaic virus ]

    Gene ID: 40525259, updated on 2-Aug-2022

    Summary

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    Gene symbol
    FK880_gp1
    Gene description
    polyprotein
    Locus tag
    FK880_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Alternanthera mild mosaic virus (nat-host: Alternanthera tenella Colla)
    Lineage
    Viruses; Riboviria; Potyviridae; Potyvirus
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    Genomic context

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    Sequence:
    NC_043136.1 (1..1462)

    NC_043136.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043136.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural infection of Alternanthera tenella (Amaranthaceae) by a new potyvirus. Almeida AM, et al. Arch Virol, 2007. PMID 17668273

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    NIb protein
    coat protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_043136.1 Reference assembly

      Range
      1..1462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009665120.1 polyprotein, partial [Alternanthera mild mosaic virus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A4GVR8
      Conserved Domains (2) summary
      pfam00767
      Location:252 → 484
      Poty_coat; Potyvirus coat protein
      cl02808
      Location:1 → 169
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

    2. YP_009667055.1 NIb protein

      Conserved Domains (1) summary
      cl02808
      Location:1 → 169
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

    3. YP_009667056.1 coat protein

      Conserved Domains (1) summary
      pfam00767
      Location:33 → 265
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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