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    TPM1 tropomyosin 1 [ Strigops habroptila (Kakapo) ]

    Gene ID: 115612575, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TPM1
    Gene description
    tropomyosin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See TPM1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) 9 NC_044285.2 (18006308..18026589)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 9 NC_044285.1 (18006308..18026589)

    Chromosome 9 - NC_044285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115613220 Neighboring gene C2 calcium-dependent domain-containing protein 4C-like Neighboring gene talin 2 Neighboring gene lactamase beta Neighboring gene ribosomal protein S27 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cardiac muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropomyosin alpha-1 chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044285.2 Reference bStrHab1.2.pri

      Range
      18006308..18026589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030496997.1 → XP_030352857.1  tropomyosin alpha-1 chain isoform X9

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    2. XM_030496992.1 → XP_030352852.1  tropomyosin alpha-1 chain isoform X4

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 258
      Tropomyosin

    3. XM_030496991.1 → XP_030352851.1  tropomyosin alpha-1 chain isoform X3

      Conserved Domains (2) summary
      pfam00261
      Location:48 → 258
      Tropomyosin
      pfam16526
      Location:13 → 72
      CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

    4. XM_030496990.1 → XP_030352850.1  tropomyosin alpha-1 chain isoform X2

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 258
      Tropomyosin

    5. XM_030497001.1 → XP_030352861.1  tropomyosin alpha-1 chain isoform X13

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    6. XM_030496988.1 → XP_030352848.1  tropomyosin alpha-1 chain isoform X1

      Conserved Domains (2) summary
      pfam00261
      Location:48 → 258
      Tropomyosin
      pfam16526
      Location:13 → 72
      CLZ; C-terminal leucine zipper domain of cyclic nucleotide-gated channels

    7. XM_030496999.1 → XP_030352859.1  tropomyosin alpha-1 chain isoform X11

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    8. XM_030496998.1 → XP_030352858.1  tropomyosin alpha-1 chain isoform X10

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    9. XM_030496996.1 → XP_030352856.1  tropomyosin alpha-1 chain isoform X8

      UniProtKB/TrEMBL
      A0A672UZF1
      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    10. XM_030497003.1 → XP_030352863.1  tropomyosin alpha-1 chain isoform X15

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 280
      Tropomyosin

    11. XM_030497012.1 → XP_030352872.1  tropomyosin alpha-1 chain isoform X23

      Conserved Domains (2) summary
      TIGR00998
      Location:1 → 159
      8a0101; efflux pump membrane protein (multidrug resistance protein A)
      pfam00261
      Location:90 → 324
      Tropomyosin

    12. XM_030496995.1 → XP_030352855.1  tropomyosin alpha-1 chain isoform X7

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    13. XM_030496994.1 → XP_030352854.1  tropomyosin alpha-1 chain isoform X6

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    14. XM_030496993.1 → XP_030352853.1  tropomyosin alpha-1 chain isoform X5

      Conserved Domains (1) summary
      pfam00261
      Location:48 → 282
      Tropomyosin

    15. XM_030497007.1 → XP_030352867.1  tropomyosin alpha-1 chain isoform X18

      UniProtKB/TrEMBL
      A0A672V2F8
      Conserved Domains (1) summary
      pfam00261
      Location:12 → 246
      Tropomyosin

    16. XM_030497011.1 → XP_030352871.1  tropomyosin alpha-1 chain isoform X22

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 244
      Tropomyosin

    17. XM_030497006.1 → XP_030352866.1  tropomyosin alpha-1 chain isoform X17

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 246
      Tropomyosin

    18. XM_030497010.1 → XP_030352870.1  tropomyosin alpha-1 chain isoform X21

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 244
      Tropomyosin

    19. XM_030497004.1 → XP_030352864.1  tropomyosin alpha-1 chain isoform X16

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 246
      Tropomyosin

    20. XM_030497008.1 → XP_030352868.1  tropomyosin alpha-1 chain isoform X19

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 246
      Tropomyosin

    21. XM_030497009.1 → XP_030352869.1  tropomyosin alpha-1 chain isoform X20

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 246
      Tropomyosin

    22. XM_030497002.1 → XP_030352862.1  tropomyosin alpha-1 chain isoform X14

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 222
      Tropomyosin

    23. XM_030497000.1 → XP_030352860.1  tropomyosin alpha-1 chain isoform X12

      Conserved Domains (1) summary
      pfam00261
      Location:12 → 222
      Tropomyosin

    RNA

    1. XR_003993081.1 RNA Sequence

    2. XR_003993082.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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