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    LOC118409603 fibrillin-2-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118409603, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118409603
    Gene description
    fibrillin-2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118409603 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    69
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 1 NC_049979.1 (14934435..14985602)

    Chromosome 1 - NC_049979.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 1-like Neighboring gene uncharacterized LOC118423202 Neighboring gene uncharacterized LOC118411491 Neighboring gene BTB/POZ domain-containing protein 9-like Neighboring gene RNA transcription, translation and transport factor protein-like Neighboring gene lysosomal-trafficking regulator-like Neighboring gene zinc finger protein 525-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049979.1 Chromosome 1 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fibrillin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049979.1 Reference Bfl_VNyyK Primary Assembly

      Range
      14934435..14985602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035810780.1 → XP_035666673.1  fibrillin-2-like

      UniProtKB/TrEMBL
      A0A9J7KME7, C3Y0L6
      Conserved Domains (8) summary
      smart00135
      Location:3058 → 3100
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:2933 → 2972
      EGF_CA; Calcium-binding EGF-like domain
      smart00539
      Location:96 → 249
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd05819
      Location:3068 → 3103
      NHL; NHL repeat [structural motif]
      cl18310
      Location:3034 → 3247
      NHL; NHL repeat unit of beta-propeller proteins
      pfam07474
      Location:369 → 548
      G2F; G2F domain
      pfam12947
      Location:626 → 660
      EGF_3; EGF domain
      cl21504
      Location:1042 → 1070
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    Nucleotide Protein Strain
    Heading Accession and Version

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