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    ToMarV_RNA1gp1 polyprotein [ Tomato marchitez virus ]

    Gene ID: 6391316, updated on 18-Aug-2023

    Summary

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    Gene symbol
    ToMarV_RNA1gp1
    Gene description
    polyprotein
    Locus tag
    ToMarV_RNA1gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tomato marchitez virus (isolate: PRI-TMarV0601)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Torradovirus
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    Genomic context

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    Location:
    segment: RNA 1
    Sequence:
    NC_010987.1 (141..6596)

    NC_010987.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010987.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tomato marchitez virus, a new plant picorna-like virus from tomato related to tomato torrado virus. Verbeek M, et al. Arch Virol, 2008. PMID 17965923

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    RNA-dependent RNA polymerase
    helicase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_010987.1 Reference assembly

      Range
      141..6596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_001976147.1 polyprotein [Tomato marchitez virus]

      See identical proteins and their annotated locations for YP_001976147.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A140G937, A9UC61
      Conserved Domains (2) summary
      pfam00910
      Location:388 → 495
      RNA_helicase; RNA helicase
      cl02808
      Location:1136 → 1641
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_001976153.1 RNA-dependent RNA polymerase

      Conserved Domains (1) summary
      cd01699
      Location:1 → 249
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...

    3. YP_001976154.1 helicase

      Conserved Domains (1) summary
      pfam00910
      Location:1 → 98
      RNA_helicase; RNA helicase
    Nucleotide Protein
    Heading Accession and Version

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