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    ftz-f1 ftz transcription factor 1 [ Drosophila obscura ]

    Gene ID: 111073394, updated on 22-May-2024

    Summary

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    Gene symbol
    ftz-f1
    Gene description
    ftz transcription factor 1
    See related
    EnsemblRapid:LOC111073394
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila obscura
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See ftz-f1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current ASM1815110v1 (GCF_018151105.1) Unplaced Scaffold NW_024542772.1 (36555..81886)
    100 previous assembly Dobs_1.0 (GCF_002217835.1) Unplaced Scaffold NW_019152177.1 (245101..284668)

    NW_024542772.1Genomic Context describing neighboring genes Neighboring gene catalase Neighboring gene uncharacterized LOC111073418 Neighboring gene uncharacterized LOC111081686

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hormone-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear hormone receptor FTZ-F1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila obscura Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815110v1

    Genomic

    1. NW_024542772.1 Reference ASM1815110v1

      Range
      36555..81886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041592657.1 → XP_041448591.1  nuclear hormone receptor FTZ-F1

      Related
      XP_041448591.1, XM_041592657.1
      Conserved Domains (2) summary
      cd06944
      Location:802 → 1032
      NR_LBD_Ftz-F1_like; The ligand binding domain of FTZ-F1 like nuclear receptors
      cd07167
      Location:506 → 598
      NR_DBD_Lrh-1_like; The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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