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    LUCAT1 lung cancer associated transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100505994, updated on 23-Jul-2024

    Summary

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    Official Symbol
    LUCAT1provided by HGNC
    Official Full Name
    lung cancer associated transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:48498
    See related
    Ensembl:ENSG00000248323 MIM:618190; AllianceGenome:HGNC:48498
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SCAL1; SCAT5
    Expression
    Biased expression in appendix (RPKM 2.5), bone marrow (RPKM 1.2) and 9 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See LUCAT1 in Genome Data Viewer
    Location:
    5q14.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (91302986..91314402, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (91786853..91798267, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (90598803..90610219, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986432 Neighboring gene uncharacterized LOC107986433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22785 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90575335-90576276 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90576277-90577218 Neighboring gene RNA, U4 small nuclear 90, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:90607093-90608292 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:90609644-90610843 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90627976-90628476 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:90634700-90635294 Neighboring gene ribosomal protein S18 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16171 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90679204-90679721 Neighboring gene ARRDC3 antisense RNA 1 Neighboring gene arrestin domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. lncRNA LUCAT1/ELAVL1/LIN28B/SOX2 Positive Feedback Loop Promotes Cell Stemness in Triple-Negative Breast Cancer. Xia L, et al. Breast J, 2022. PMID 35711895, Free PMC Article
    2. Concomitant and decoupled effects of cigarette smoke and SCAL1 upregulation on oncogenic phenotypes and ROS detoxification in lung adenocarcinoma cells. Cruz CRV, et al. Sci Rep, 2021 Sep 15. PMID 34526564, Free PMC Article
    3. Long non-coding RNA LUCAT1 inhibits myocardial oxidative stress and apoptosis after myocardial infarction via targeting microRNA-181a-5p. Xiao SH, et al. Bioengineered, 2021 Dec. PMID 34414854, Free PMC Article
    4. IncRNA LUCAT1 acts as a Potential Biomarker and Demonstrates Malignant Biological Behaviors in Gastric Cancer. Teng YY, et al. Clin Lab, 2021 Aug 1. PMID 34383427
    5. Expression of long non-coding RNA LUCAT1 in patients with chronic obstructive pulmonary disease and its potential functions in regulating cigarette smoke extract-induced 16HBE cell proliferation and apoptosis. Zhao S, et al. J Clin Lab Anal, 2021 Jul. PMID 34125980, Free PMC Article

    See all (45) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long non-coding RNA lung cancer-associated transcript 1 regulates ferroptosis via microRNA-34a-5p-mediated GTP cyclohydrolase 1 downregulation in lung cancer cells.
      Title: Long non‑coding RNA lung cancer‑associated transcript 1 regulates ferroptosis via microRNA‑34a‑5p‑mediated GTP cyclohydrolase 1 downregulation in lung cancer cells.
    2. LUCAT1 inhibits ferroptosis in bladder cancer by regulating the mRNA stability of STAT3.
      Title: LUCAT1 inhibits ferroptosis in bladder cancer by regulating the mRNA stability of STAT3.
    3. The lncRNA LUCAT1 is elevated in inflammatory disease and restrains inflammation by regulating the splicing and stability of NR4A2.
      Title: The lncRNA LUCAT1 is elevated in inflammatory disease and restrains inflammation by regulating the splicing and stability of NR4A2.
    4. lncRNA LUCAT1/ELAVL1/LIN28B/SOX2 Positive Feedback Loop Promotes Cell Stemness in Triple-Negative Breast Cancer.
      Title: lncRNA LUCAT1/ELAVL1/LIN28B/SOX2 Positive Feedback Loop Promotes Cell Stemness in Triple-Negative Breast Cancer.
    5. LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro.
      Title: LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro.
    6. Knockdown of lncRNA LUCAT1 attenuates sepsisinduced myocardial cell injury by sponging miR-642a.
      Title: Knockdown of lncRNA LUCAT1 attenuates sepsis‑induced myocardial cell injury by sponging miR-642a.
    7. Expression of long non-coding RNA LUCAT1 in patients with chronic obstructive pulmonary disease and its potential functions in regulating cigarette smoke extract-induced 16HBE cell proliferation and apoptosis.
      Title: Expression of long non-coding RNA LUCAT1 in patients with chronic obstructive pulmonary disease and its potential functions in regulating cigarette smoke extract-induced 16HBE cell proliferation and apoptosis.
    8. Long non-coding RNA LUCAT1 inhibits myocardial oxidative stress and apoptosis after myocardial infarction via targeting microRNA-181a-5p.
      Title: Long non-coding RNA LUCAT1 inhibits myocardial oxidative stress and apoptosis after myocardial infarction via targeting microRNA-181a-5p.
    9. Concomitant and decoupled effects of cigarette smoke and SCAL1 upregulation on oncogenic phenotypes and ROS detoxification in lung adenocarcinoma cells.
      Title: Concomitant and decoupled effects of cigarette smoke and SCAL1 upregulation on oncogenic phenotypes and ROS detoxification in lung adenocarcinoma cells.
    10. Long Noncoding RNA LUCAT1 Promotes Multiple Myeloma Cell Growth by Regulating the TGF-beta Signaling Pathway.
      Title: Long Noncoding RNA LUCAT1 Promotes Multiple Myeloma Cell Growth by Regulating the TGF-β Signaling Pathway.
    Submit: New GeneRIF Correction See all GeneRIFs (44)

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • S-phase cancer-associated transcript 7
    • lung cancer associated transcript 1 (non-protein coding)
    • smoke and cancer associated lncRNA 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103548.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC123595
      Related
      ENST00000511918.6

    2. NR_103549.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks three 3' exons and contains an alternate 3' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC123595

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      91302986..91314402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      91786853..91798267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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