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    LOC105378316 uncharacterized LOC105378316 [ Homo sapiens (human) ]

    Gene ID: 105378316, updated on 27-Aug-2024

    Summary

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    Gene symbol
    LOC105378316
    Gene description
    uncharacterized LOC105378316
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    10q21.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (58433926..58503479)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (59288050..59357663)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:60094430-60094930 Neighboring gene ubiquitin conjugating enzyme E2 D1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3385 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:60144914-60145570 Neighboring gene transcription factor A, mitochondrial Neighboring gene ReSE screen-validated silencer GRCh37_chr10:60207389-60207551 Neighboring gene uncharacterized LOC124902427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2380 Neighboring gene BicC family RNA binding protein 1 Neighboring gene family with sequence similarity 133, member A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      58433926..58503479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_945981.3 RNA Sequence

    2. XR_945983.3 RNA Sequence

    3. XR_945982.3 RNA Sequence

    4. XR_945984.3 RNA Sequence

    5. XR_007062374.1 RNA Sequence

    6. XR_945985.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      59288050..59357663
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081089.1 RNA Sequence

    2. XR_007081090.1 RNA Sequence

    3. XR_007081088.1 RNA Sequence

    4. XR_007081091.1 RNA Sequence

    5. XR_007081093.1 RNA Sequence

    6. XR_007081092.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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