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    LOC4351224 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351224, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351224
    Gene description
    ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like
    Locus tag
    OSNPB_110707000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RA; rca; RCAA1; RCAA2; OsrcaA1; OsJ_033539
    Expression
    Broad expression in roots after flowering (RPKM 349.7), leaves after flowering (RPKM 203.5) and 4 other tissues See more
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    Genomic context

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    See LOC4351224 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (30986845..30990048, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28932976..28936094, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein Neighboring gene putative cyclin-D7-1 Neighboring gene uncharacterized LOC107279508 Neighboring gene ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic-like Neighboring gene probable transcriptional regulator RABBIT EARS

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. In Vitro Characterization of Thermostable CAM Rubisco Activase Reveals a Rubisco Interacting Surface Loop. Shivhare D, et al. Plant Physiol, 2017 Jul. PMID 28546437, Free PMC Article
    2. Molecular characterization of ribulose-1,5-bisphosphate carboxylase/oxygenase activase in rice leaves. To KY, et al. Planta, 1999 Jul. PMID 10467032
    3. Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress. Qu Y, et al. Plant Cell Environ, 2021 Jul. PMID 33745135
    4. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    5. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress.
      Title: Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress.
    2. A comparative biochemical characterization of rice (Oryza sativa) and Agave tequilana Rca isoforms demonstrated that the CAM Rca isoforms are approximately10 degrees C more thermostable than the C3 isoforms.
      Title: In Vitro Characterization of Thermostable CAM Rubisco Activase Reveals a Rubisco Interacting Surface Loop.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
    Names
    LOC_Os11g47970
    ribulose-1,5-bisphosphate carboxylase/oxygenase activase
    ruBisCO activase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404598.1 → NP_001391527.1  ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AU056165, AU056725, CB641586, CI571744
      UniProtKB/Swiss-Prot
      A3CE17, B7EAB2, P93431, Q0IQU7, Q53MC4, Q53MC5, Q53NV9, Q7XXR6, Q9LRH9, Q9LRI0
      UniProtKB/TrEMBL
      B8BIM0

    RNA

    1. NR_175846.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AU056165, AU093924, CB641586, CI571744

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      30986845..30990048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93431.2 GenPept UniProtKB/Swiss-Prot:P93431

    Gene LinkOut

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    Research Materials