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    FAM138C family with sequence similarity 138 member C [ Homo sapiens (human) ]

    Gene ID: 654835, updated on 22-Oct-2024

    Summary

    Official Symbol
    FAM138Cprovided by HGNC
    Official Full Name
    family with sequence similarity 138 member Cprovided by HGNC
    Primary source
    HGNC:HGNC:32333
    See related
    Ensembl:ENSG00000218839 AllianceGenome:HGNC:32333
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    F379
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See FAM138C in Genome Data Viewer
    Location:
    9p24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (34394..35864, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (28530..30000, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34394..35864, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene DEAD/H-box helicase 11 like 5 (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:20697-21539 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:21540-22381 Neighboring gene WASH complex subunit 1 Neighboring gene microRNA 1302-9 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:46796-46960 Neighboring gene protein piccolo-like Neighboring gene PGM5P3 antisense RNA 1 Neighboring gene phosphoglucomutase 5 pseudogene 3 Neighboring gene NANOG hESC enhancer GRCh37_chr9:82860-83384 Neighboring gene Sharpr-MPRA regulatory region 4499 Neighboring gene MPRA-validated peak7198 silencer Neighboring gene long intergenic non-protein coding RNA 1388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19719

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026822.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL449043
      Related
      ENST00000449442.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      34394..35864 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      28530..30000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)